Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq18099 228 1e-54
seq28467 122 1e-22
>seq18099
Length=159039
Score = 228 bits (252), Expect = 1e-54
Identities = 611/920 (66%), Gaps = 32/920 (3%)
Strand=Plus/Minus
Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908
||| ||||| ||||| || | ||||| ||||||||||| || |||| || |||
Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885
Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968
||||| ||||||| |||||| || ||| | ||| | | || | | |
Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825
Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028
|| ||||| ||||| || || ||||| |||||| ||||| |||||| || | |
Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCAA 20765
Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATC-CACTATTA 48087
| || || || || | ||||||| || || || ||||| ||| | |
Sbjct 20764 CGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACAC-ACAA 20706
Query 48088 TCGATGTTACCGTTTCCTCACTTGG-TGGATAC--AACAAATGTTTAAACATTAAACATG 48144
|||| | || |||||||||| | | ||| |||| | || |||| | ||||| |
Sbjct 20705 TCGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACAGA-GTATAAA--TCAAACAAG 20649
Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204
| |||||||| ||||||||||| ||||| ||||| |||||||| || || | ||| |
Sbjct 20648 CGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAG 20589
Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264
|||| ||||||||||| || ||||| || || | ||| || ||||| |||||||| |
Sbjct 20588 GCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATAC 20529
Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACC 48324
|||| || || || || || | | || | | || ||| | ||||| |
Sbjct 20528 CTTCAACACAAGCGAA--CGCTACGATACGTTCAGCGAATG-----TTTGAG-ATCCATC 20477
Query 48325 GTT----GT----GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376
| | || ||||| | ||| ||||| | |||||||| || ||||| || |||
Sbjct 20476 GATCCAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACG 20417
Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436
|| | | | | |||| ||| ||||||| | ||| || || | | |||| ||||||
Sbjct 20416 GAATAAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACAT 20357
Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496
|| || || ||||| ||||| || || || |||||||| || | |||||| | ||
Sbjct 20356 CTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGAC 20297
Query 48497 CTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555
||||| || | ||| |||||| ||| | || || ||| ||||| ||| || |
Sbjct 20296 TTGTACATCTG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGG 20238
Query 48556 CAAAAAATGCTAATACATGTTTAATAAA---ATATTTTTCGTTGGAAGTCAGTTTATTCC 48612
| || || || | ||| ||||| || || | || | ||| | | || || | ||
Sbjct 20237 CGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCG---TTGAGATTTTCCC 20181
Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672
||||| | | |||| ||| | ||| |||||||| || ||||| || ||||| || ||||
Sbjct 20180 AGTCACGGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTT 20121
Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGAT 48732
| || ||||| | ||| || | ||| || || || || ||| ||||| | |||
Sbjct 20120 TCTTGTACATTTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCTGTCTGGTG 20061
Query 48733 TTTTTGCAAGGATAGGTTCC 48752
|| | ||||| ||| |||
Sbjct 20060 TTGGGGTAAGGAGAGGCTCC 20041
>seq28467
Length=106825
Score = 122 bits (134), Expect = 1e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
||||| ||||| | ||| | || || | |||| | || | || ||| |||| ||||||
Sbjct 81284 CCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCGCAGCATCGGAACAATACCA 81343
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
|||||| |||||| || ||| ||||||||||||| ||||||| |||||| ||| ||
Sbjct 81344 TTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTTGCGCGGATATTATGAATCGAA 81403
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| || || || || || ||| ||| || || |||||| ||||| || ||
Sbjct 81404 ACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATATT 81463
Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380
||||| ||||| |||||| |||| | |||||| ||||||
Sbjct 81464 CCCTCGATACTATCATCCTTCATACAGACAAGAAAGCAGCTA 81505
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200
||| ||||||||| | ||||| || |||||| ||||| | | |||||||||| || |
Sbjct 79490 CAAGACTCTACGACTATAAATGTTTGAGGTATACGGTTCAAAACATTCATTGTTCCCGAG 79549
Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260
||| || || |||||||||||||| ||||| || | | | |||||||| ||||
Sbjct 79550 AATCTGGCTGGTTGAAGCAGTTGGCATCGGTGCAACTAGAAGAGAATTTCTGATTCCATT 79609
Query 77261 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCA 77320
|| || ||||| | || ||| ||||| | || ||||| | |||| |||
Sbjct 79610 CTTTGAAATCATATCTCTGAGTGCAGCCCAGTCCCAGCGGTCCGAAGGAATCACATTCCA 79669
Query 77321 AAGATCGTATTGTAGAATTCC 77341
| ||| ||| ||||||||
Sbjct 79670 CATATCAGGTTGAAGAATTCC 79690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694418936316000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |