Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq18099 228 1e-54 seq28467 122 1e-22 >seq18099 Length=159039 Score = 228 bits (252), Expect = 1e-54 Identities = 611/920 (66%), Gaps = 32/920 (3%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| ||||| || | ||||| ||||||||||| || |||| || ||| Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 ||||| ||||||| |||||| || ||| | ||| | | || | | | Sbjct 20884 CTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAA 20825 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 || ||||| ||||| || || ||||| |||||| ||||| |||||| || | | Sbjct 20824 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCAA 20765 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATC-CACTATTA 48087 | || || || || | ||||||| || || || ||||| ||| | | Sbjct 20764 CGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACAC-ACAA 20706 Query 48088 TCGATGTTACCGTTTCCTCACTTGG-TGGATAC--AACAAATGTTTAAACATTAAACATG 48144 |||| | || |||||||||| | | ||| |||| | || |||| | ||||| | Sbjct 20705 TCGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACAGA-GTATAAA--TCAAACAAG 20649 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 | |||||||| ||||||||||| ||||| ||||| |||||||| || || | ||| | Sbjct 20648 CGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAG 20589 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264 |||| ||||||||||| || ||||| || || | ||| || ||||| |||||||| | Sbjct 20588 GCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATAC 20529 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACC 48324 |||| || || || || || | | || | | || ||| | ||||| | Sbjct 20528 CTTCAACACAAGCGAA--CGCTACGATACGTTCAGCGAATG-----TTTGAG-ATCCATC 20477 Query 48325 GTT----GT----GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 | | || ||||| | ||| ||||| | |||||||| || ||||| || ||| Sbjct 20476 GATCCAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACG 20417 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 || | | | | |||| ||| ||||||| | ||| || || | | |||| |||||| Sbjct 20416 GAATAAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACAT 20357 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 || || || ||||| ||||| || || || |||||||| || | |||||| | || Sbjct 20356 CTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGAC 20297 Query 48497 CTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||||| || | ||| |||||| ||| | || || ||| ||||| ||| || | Sbjct 20296 TTGTACATCTG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGG 20238 Query 48556 CAAAAAATGCTAATACATGTTTAATAAA---ATATTTTTCGTTGGAAGTCAGTTTATTCC 48612 | || || || | ||| ||||| || || | || | ||| | | || || | || Sbjct 20237 CGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCG---TTGAGATTTTCCC 20181 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 ||||| | | |||| ||| | ||| |||||||| || ||||| || ||||| || |||| Sbjct 20180 AGTCACGGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTT 20121 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGAT 48732 | || ||||| | ||| || | ||| || || || || ||| ||||| | ||| Sbjct 20120 TCTTGTACATTTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCTGTCTGGTG 20061 Query 48733 TTTTTGCAAGGATAGGTTCC 48752 || | ||||| ||| ||| Sbjct 20060 TTGGGGTAAGGAGAGGCTCC 20041 >seq28467 Length=106825 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || || | |||| | || | || ||| |||| |||||| Sbjct 81284 CCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCGCAGCATCGGAACAATACCA 81343 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||| |||||| || ||| ||||||||||||| ||||||| |||||| ||| || Sbjct 81344 TTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTTGCGCGGATATTATGAATCGAA 81403 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || ||| ||| || || |||||| ||||| || || Sbjct 81404 ACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATATT 81463 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| ||||| |||||| |||| | |||||| |||||| Sbjct 81464 CCCTCGATACTATCATCCTTCATACAGACAAGAAAGCAGCTA 81505 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200 ||| ||||||||| | ||||| || |||||| ||||| | | |||||||||| || | Sbjct 79490 CAAGACTCTACGACTATAAATGTTTGAGGTATACGGTTCAAAACATTCATTGTTCCCGAG 79549 Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260 ||| || || |||||||||||||| ||||| || | | | |||||||| |||| Sbjct 79550 AATCTGGCTGGTTGAAGCAGTTGGCATCGGTGCAACTAGAAGAGAATTTCTGATTCCATT 79609 Query 77261 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCA 77320 || || ||||| | || ||| ||||| | || ||||| | |||| ||| Sbjct 79610 CTTTGAAATCATATCTCTGAGTGCAGCCCAGTCCCAGCGGTCCGAAGGAATCACATTCCA 79669 Query 77321 AAGATCGTATTGTAGAATTCC 77341 | ||| ||| |||||||| Sbjct 79670 CATATCAGGTTGAAGAATTCC 79690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694418936316000