Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq28467 116 5e-21 seq21777 89.7 7e-13 >seq28467 Length=106825 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | |||| | || | || ||| |||| ||| || Sbjct 81284 CCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCGCAGCATCGGAACAATACCA 81343 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||| ||||| || ||| ||||||||||||| ||| || |||||| ||| || Sbjct 81344 TTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTTGCGCGGATATTATGAATCGAA 81403 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || |||| || ||||| |||||| || ||||| || Sbjct 81404 ACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATATT 81463 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| |||||||||||| |||| | |||||| |||||| Sbjct 81464 CCCTCGATACTATCATCCTTCATACAGACAAGAAAGCAGCTA 81505 >seq21777 Length=19835 Score = 89.7 bits (98), Expect = 7e-13 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||||| || || | |||||||||||||||||||||||| | | ||| | || | Sbjct 4383 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAAGTG 4442 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| |||| ||| | | || ||||| | ||| || || || ||||| || | ||||| Sbjct 4443 GTAAGTTTTAATTGCAGAGTCAATATCATCCTTG-TGTATCCCAACAGCAACCCTCATCA 4501 Query 77112 ACATATGCTGAGGTCGTTCTAC-AGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 77170 ||| || ||||| | || || | | || | | | ||| || | ||||||| | || Sbjct 4502 GCATGTGTTGAGGCCTCTCAACAACTGTTCCT-TGGACTTTTAAGAGGTATGATCTCTCA 4560 Query 77171 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 | ||||| || ||||| || | |||| ||| || Sbjct 4561 AGCGTTTTGAATCCAAAGTAATCGTATTCAAAATC 4595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712677966408000