Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_031055.1
Length=43773
Score E
Sequences producing significant alignments: (Bits) Value
seq20250 785 0.0
>seq20250
Length=26292
Score = 785 bits (870), Expect = 0.0
Identities = 1277/1821 (70%), Gaps = 43/1821 (2%)
Strand=Plus/Plus
Query 26348 GGACTAACGA---TTGGAGCTGTTTTATTGGAAAGATATCTGGTTCAAAATGACCGGATT 26404
||| |||||| |||||| | || || |||| |||| || ||||||| | ||
Sbjct 23385 GGAGTAACGACAATTGGAGGGGCGTTGTTAGAAAAGCATCTTGTGAAAAATGATCATGTT 23444
Query 26405 ACAGCAGGTAAATTAGTATCAGATGGACTGTATCACGGACTTCGGATAGGTAGCATTGGT 26464
|||||| ||| | || |||||| | ||| | ||| | |||||||| | || ||
Sbjct 23445 GCAGCAGCGAAACTTTTAAGTGATGGAATATATTATGGAATGAGGATAGGTGGAGTTTGT 23504
Query 26465 TTTATTGTATATGTGTTCATTCGAGTTGTAAGGATGTTTTAAAGGGAGGGTATGA-ATGT 26523
|| |||| ||||| ||||||| | |||| ||||||||| |||||| || | |||
Sbjct 23505 TTCATTGGTTATGTATTCATTCAAATTGTGGAGATGTTTTA--GGGAGGAAATTACATGG 23562
Query 26524 GA----TGAAGGAATGGTTTCATAAAAGAGCTATAAAGAATCTTTTAATTGAGGTATTCa 26579
| | ||||| ||| |||||||| | | | ||||||| | || ||||||||
Sbjct 23563 GGATTTTAAAGGATTGGCTTCATAAACAAAGTTTGAAGAATCGACTTATAGAGGTATTTG 23622
Query 26580 aaaaaaGTGGTATTTACTATGAACACCAAACAAGAGGAGGTAAATTACCTGTTTTCCCGA 26639
||| ||| | || || || ||||||||||| || ||| |||| ||| |||||
Sbjct 23623 TAAAGGCAGGTTTATATGTAGACCATCAAACAAGAGGTGGAAAAGTACCCATTTACCCGA 23682
Query 26640 AAATCCAT--CATGTT---CTAGAAACAAAAGATTCTGTCCGATATACATTTACTTTACC 26694
| || ||| ||| || || |||| ||||| ||| |||| | |||||| | ||
Sbjct 23683 AGATACATGACATTTTTTCCTCGAAAGAAAAGGTTC-----GATACATATTTACCATTCC 23737
Query 26695 AAACGGGGTAGATCCGCAAACGATTGAGAAGAAATGGTTTTGCTTTCAGCAAATCTTAGG 26754
|||||| |||||||| ||| ||||| ||||| |||||||||||||| ||||| |||||
Sbjct 23738 AAACGGATTAGATCCGAAAAACATTGAAAAGAAGTGGTTTTGCTTTCAACAAATATTAGG 23797
Query 26755 GAGGGAACTGGCGATTGAAGGAGATATAAAACGCTTTGTATTGCACTCGTT-CAAAC--A 26811
| | | | || |||||||| ||||| ||| | |||||| | | ||| || | |
Sbjct 23798 GCGTAATGTAGCAATTGAAGGTGATATTAAAAGGTTTGTACTTAATGTGTTTCATTCGGA 23857
Query 26812 TAATAGCTTACAACCGTACTTGTATAACTATTCAGATTGGTTACCACATCTAAAAGGACA 26871
| | | ||||| | ||| || | ||| | ||| |||| || | | |||
Sbjct 23858 TGCTGGGCTACAAGCATACAATTACAGTTATAAGAAGTGGCAACCATTACTTATACAACA 23917
Query 26872 T-AGCATCCCTGTAGTGGTAGGAAAGGACCAATTTGGAAAGTGGATTGTATATGATATGA 26930
| | | |||| ||| | ||||| |||||||||||||| |||| ||||| ||||
Sbjct 23918 TCATCTTCCC-GTAATTGTAGGGCGTGACCAATTTGGAAATATGATTACGTATGACATGA 23976
Query 26931 CGGATTCGAATAGCCCACACTTATTAATAGCGGGAGAAACAGGAAGTGGTAAAAGTAGTA 26990
| ||| || | || || | |||| || ||||| ||||| || || ||||||||||
Sbjct 23977 TTGCTTCAAACACGCCGCATCTTCTAATTGCAGGAGAGACAGGGAGCGGAAAAAGTAGTA 24036
Query 26991 TGGTACGCGTTATTTTATCTACATTGATTCAACATTTGCCACCAGAATCATTACAGCTGT 27050
||||||||||| | | || ||| | |||||| || || | || || |||||| |||
Sbjct 24037 TGGTACGCGTTGTACTGTCCACACTCATTCAATATATGTCTCCTGATAAATTACATTTGT 24096
Query 27051 ATTTAGGTGATTTGAAGAACTCAGAATTTCACTTTTTAAGAAGAGTGCAACACGTTAAAA 27110
| | |||||||||||||| || |||||||| || || |||| ||| ||||||| |||
Sbjct 24097 ACCTGGGTGATTTGAAGAATTCCGAATTTCATTTCTTGCGAAGGGTGAAACACGTAAAAG 24156
Query 27111 AAGTTTGCATGGAAGAAGTAGAAATGGAGGTAATGTTAAACCAATTGTGGATGGAAATTA 27170
| ||||||||||||||| |||||||| || | ||| | | || |||||| ||||||
Sbjct 24157 AGGTTTGCATGGAAGAAATAGAAATGAAGATTATGCTGCAGAAAGTGTGGAAGGAAATAC 24216
Query 27171 TCAAAAGACGTAAGTGTATGGAGAAATATGAAGTAGACCACGTTAACGAATACAACAAAG 27230
| || | | || | ||||| | ||||||||||| || || ||||||||||||||
Sbjct 24217 GCGAACGTAGAAAATTGATGGAAGAGTATGAAGTAGATCATATTGACGAATACAACAAAT 24276
Query 27231 TGACTACAGAGGAAAAATTACCGTATATTTTAATTTGCATTGATGAGGTTGCGATGTTGG 27290
| | | | || | | ||| ||||| ||| || || || || || | ||||||
Sbjct 24277 TAAATCCTGATAATCAGAAACCATATATCTTACTTGCTATCGACGAAGTGGTCATGTTGC 24336
Query 27291 AAGATGAAAACGATAGTATGAAAATTATTAGAAAGATATCAGCTGTCGGGCGATCATTAG 27350
|||||||||| || ||||| || || ||| ||||| || ||||| | || | |
Sbjct 24337 AAGATGAAAAAGAATGTATGTCTATAGTTGAAAAAATATCGGCAGTCGGAAGGGCACTTG 24396
Query 27351 GCGTATTTTTAATGTTATCGATGCAGCGGCCGGATGCAACCGTTATCGATGGGAAATTAA 27410
| || ||||||||| || ||||| || || ||||||| || | ||||| || ||||
Sbjct 24397 GAGTTTTTTTAATGCTAAGTATGCAACGCCCTGATGCAAAAGTACTGGATGGTAAGTTAA 24456
Query 27411 AAGTGAATATGACAGTCAGAATGGGGTTCCAGTGTGATTCATCGTTAAATGCAGGA--AT 27468
| | |||||||| || |||||||| || | |||||| | | || ||| | ||
Sbjct 24457 AGCTCAATATGACGGTTAGAATGGGCTTTAAATGTGATAGTACAATTAA--CAGTAATAT 24514
Query 27469 TATAGGTACACCAGGTTCAGAACTGTTAGAGCAATCCGGGCAAATGATTTTCAAATTAAA 27528
||| ||||| || |||||||||| || |||||||| || |||||||| || || |||||
Sbjct 24515 TATGGGTACTCCTGGTTCAGAACGCTTGGAGCAATCTGGCCAAATGATATTAAAGTTAAA 24574
Query 27529 AGGACTAAAGAAAGTGCAAGCTCCAGAGTTAAAGTTAGAAAAAGCAAAGAAATTAGTGGC 27588
||| |||||||||| ||| |||| | ||| | ||| ||||| ||||| |||| |
Sbjct 24575 TGGATTAAAGAAAGTACAATCTCCTTATTTAGAATTAAGTAAAGCCAAGAAGATAGTTGA 24634
Query 27589 TCCT-------TTCAGAATGACAAAAGAAA-TAGAAGTAAGTA-CTGAAGTGAAAGAGGA 27639
||| ||| ||| || || | ||| | | | | || | ||| |||| |
Sbjct 24635 ACCTTATCGCGTTCCGAAAGAGAATATAAAGTTGCAAAACCTACCACAAG---AAGAAAA 24691
Query 27640 GCCTTTATTTGGGGTGTTAGATGATGAGGAATAGAGATATGGCTATTTTGAAGAATTTGA 27699
| ||||| |||||||||||| |||||||||||||| | || || | || |||||||
Sbjct 24692 TCAATTATTCGGGGTGTTAGATTATGAGGAATAGAGACAAAGCCATACTAAACAATTTGA 24751
Query 27700 CTAAATTTCGTTGTATGTCACGGGACGACATTGTGGAATTACA-CTTCAGCCATTTGAAA 27758
||| | |||||||| || || |||||| | || || || |||| | || ||
Sbjct 24752 AGCTTTTTAGATGTATGTCTCGTGATGACATTATTGATTTGCATTTTCAAGGA-TTAAAG 24810
Query 27759 AACCCAATAACATCATGCAATACGGTATTAAAAAGATTACGTAGAGATGGACATGTGGAA 27818
||| | | |||| || |||||||| | || ||||| | |||||||| ||||||||
Sbjct 24811 AACGCGGTTACATGCTGTAATACGGTGATGAAGCGATTAAGAAGAGATGGTCATGTGGAT 24870
Query 27819 GTGAATACTACATTCCAGCCATATGTGTATTTTCCACAACCAAGCGCAATTAGAAAAACA 27878
| |||| | |||||||| | || || || ||| | ||| || || | |||||
Sbjct 24871 GCCAATATCTCGCAACAGCCATACATTTACTTCCCTCAATCCAGCACACTTCGCAAAACT 24930
Query 27879 AGTCAAAAAATACCACATTTCTTAGGCATAGTAGATGCGTATAAACAATTGATCCAAAAT 27938
|| ||||| || || || || |||||||| |||||| |||||||| | ||| | ||
Sbjct 24931 AGCCAAAAGATTCCCCACTTTCTAGGCATATTAGATGTATATAAACAGCTTATCTATTAT 24990
Query 27939 GAGAAACCTAAGATTTTTAAAGTAGAACCGAAGTATGGAAAAGAATATATGGAACCTGAC 27998
|| |||||||| | |||||||| || || ||||| || ||||||| |||||||||||
Sbjct 24991 GAAAAACCTAAACTGTTTAAAGTGGAGCCAAAGTACGGTAAAGAATTCATGGAACCTGAT 25050
Query 27999 ATATTTACGATTTGGCGAAAAGCTCCTTTCTTTATAGAAGTACAAAAATCAATATATAGT 28058
|||||| |||||||| | | |||| ||||| || ||||| || | ||| | || ||
Sbjct 25051 GCATTTACAATTTGGCGTAGATCTCCATTCTTCATTGAAGTCCAGAGGTCAGTTTACAGC 25110
Query 28059 AAATCTGTTATGCAAGAGAAAATAAAACGGTATGAAATGTATTTTTACAGTATGAAGTGG 28118
||| ||||||||||| |||||||| |||||||| | || || ||||| | | |||
Sbjct 25111 AAAAAAGTTATGCAAGATAAAATAAATAGGTATGAATTATACTTCCACAGTCAGGAATGG 25170
Query 28119 CAAGAAGAATCATGGCAGCCA 28139
|| | ||||| |||||||||
Sbjct 25171 CATAACGAATCTTGGCAGCCA 25191
Score = 255 bits (282), Expect = 2e-63
Identities = 185/213 (87%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 35610 TGGATAGTGGCTACCGTGGAGAGGTTGG-GGTGCTGGTTGATAACACTGAAAGACCAATA 35668
||||||||||||| ||||||| |||||| |||| |||| |||||||||||||||||||||
Sbjct 4402 TGGATAGTGGCTATCGTGGAGCGGTTGGAGGTGTTGGTAGATAACACTGAAAGACCAATA 4461
Query 35669 AGTTTAAATATGCAAGCTCATGTGATTGAAAAAGGAACACGTATTGCTCAAGGCGTCATA 35728
|||||||||||| |||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct 4462 AGTTTAAATATGAAAGCTCATGTAATCAAAAAAGGTACACGCATCGCTCAAGGCGTCATA 4521
Query 35729 GCGCCAGTGGTAACAGCTCATTTCGTTGAAGTGGAAGAACTATCGGTTAGTGAACGTGGC 35788
||| |||| |||||||||||||| ||||| ||||| || |||| |||||||||||| ||
Sbjct 4522 GCGTCAGTAGTAACAGCTCATTTTGTTGAGGTGGACGAGCTATTGGTTAGTGAACGAGGT 4581
Query 35789 GTTGGGGGCTTTGGATCTACAGGTACTAAATAA 35821
||||| || |||| |||||| || || || |||
Sbjct 4582 GTTGGCGGATTTGAATCTACGGGAACGAAGTAA 4614
Score = 87.8 bits (96), Expect = 5e-13
Identities = 80/97 (82%), Gaps = 8/97 (8%)
Strand=Plus/Plus
Query 39637 AAAGAGCAGCTAGCAAAAGCTAACTGCTC-----AGGTAAT-GGAGAAAGATTACCATGT 39690
||| |||||||||||| |||||||||||| ||| ||| |||||||||| |||||||
Sbjct 8310 AAAAAGCAGCTAGCAATAGCTAACTGCTCATATAAGGGAATCGGAGAAAGATAACCATGT 8369
Query 39691 CATCTATAGTATTGACGGAATATTGAG-TTTTATTCA 39726
|| ||| |||| |||||||||| || |||||||||
Sbjct 8370 -GTCCATATTATTAACGGAATATTAAGTTTTTATTCA 8405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139904177964250
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