Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_031055.1 Length=43773 Score E Sequences producing significant alignments: (Bits) Value seq20250 785 0.0 >seq20250 Length=26292 Score = 785 bits (870), Expect = 0.0 Identities = 1277/1821 (70%), Gaps = 43/1821 (2%) Strand=Plus/Plus Query 26348 GGACTAACGA---TTGGAGCTGTTTTATTGGAAAGATATCTGGTTCAAAATGACCGGATT 26404 ||| |||||| |||||| | || || |||| |||| || ||||||| | || Sbjct 23385 GGAGTAACGACAATTGGAGGGGCGTTGTTAGAAAAGCATCTTGTGAAAAATGATCATGTT 23444 Query 26405 ACAGCAGGTAAATTAGTATCAGATGGACTGTATCACGGACTTCGGATAGGTAGCATTGGT 26464 |||||| ||| | || |||||| | ||| | ||| | |||||||| | || || Sbjct 23445 GCAGCAGCGAAACTTTTAAGTGATGGAATATATTATGGAATGAGGATAGGTGGAGTTTGT 23504 Query 26465 TTTATTGTATATGTGTTCATTCGAGTTGTAAGGATGTTTTAAAGGGAGGGTATGA-ATGT 26523 || |||| ||||| ||||||| | |||| ||||||||| |||||| || | ||| Sbjct 23505 TTCATTGGTTATGTATTCATTCAAATTGTGGAGATGTTTTA--GGGAGGAAATTACATGG 23562 Query 26524 GA----TGAAGGAATGGTTTCATAAAAGAGCTATAAAGAATCTTTTAATTGAGGTATTCa 26579 | | ||||| ||| |||||||| | | | ||||||| | || |||||||| Sbjct 23563 GGATTTTAAAGGATTGGCTTCATAAACAAAGTTTGAAGAATCGACTTATAGAGGTATTTG 23622 Query 26580 aaaaaaGTGGTATTTACTATGAACACCAAACAAGAGGAGGTAAATTACCTGTTTTCCCGA 26639 ||| ||| | || || || ||||||||||| || ||| |||| ||| ||||| Sbjct 23623 TAAAGGCAGGTTTATATGTAGACCATCAAACAAGAGGTGGAAAAGTACCCATTTACCCGA 23682 Query 26640 AAATCCAT--CATGTT---CTAGAAACAAAAGATTCTGTCCGATATACATTTACTTTACC 26694 | || ||| ||| || || |||| ||||| ||| |||| | |||||| | || Sbjct 23683 AGATACATGACATTTTTTCCTCGAAAGAAAAGGTTC-----GATACATATTTACCATTCC 23737 Query 26695 AAACGGGGTAGATCCGCAAACGATTGAGAAGAAATGGTTTTGCTTTCAGCAAATCTTAGG 26754 |||||| |||||||| ||| ||||| ||||| |||||||||||||| ||||| ||||| Sbjct 23738 AAACGGATTAGATCCGAAAAACATTGAAAAGAAGTGGTTTTGCTTTCAACAAATATTAGG 23797 Query 26755 GAGGGAACTGGCGATTGAAGGAGATATAAAACGCTTTGTATTGCACTCGTT-CAAAC--A 26811 | | | | || |||||||| ||||| ||| | |||||| | | ||| || | | Sbjct 23798 GCGTAATGTAGCAATTGAAGGTGATATTAAAAGGTTTGTACTTAATGTGTTTCATTCGGA 23857 Query 26812 TAATAGCTTACAACCGTACTTGTATAACTATTCAGATTGGTTACCACATCTAAAAGGACA 26871 | | | ||||| | ||| || | ||| | ||| |||| || | | ||| Sbjct 23858 TGCTGGGCTACAAGCATACAATTACAGTTATAAGAAGTGGCAACCATTACTTATACAACA 23917 Query 26872 T-AGCATCCCTGTAGTGGTAGGAAAGGACCAATTTGGAAAGTGGATTGTATATGATATGA 26930 | | | |||| ||| | ||||| |||||||||||||| |||| ||||| |||| Sbjct 23918 TCATCTTCCC-GTAATTGTAGGGCGTGACCAATTTGGAAATATGATTACGTATGACATGA 23976 Query 26931 CGGATTCGAATAGCCCACACTTATTAATAGCGGGAGAAACAGGAAGTGGTAAAAGTAGTA 26990 | ||| || | || || | |||| || ||||| ||||| || || |||||||||| Sbjct 23977 TTGCTTCAAACACGCCGCATCTTCTAATTGCAGGAGAGACAGGGAGCGGAAAAAGTAGTA 24036 Query 26991 TGGTACGCGTTATTTTATCTACATTGATTCAACATTTGCCACCAGAATCATTACAGCTGT 27050 ||||||||||| | | || ||| | |||||| || || | || || |||||| ||| Sbjct 24037 TGGTACGCGTTGTACTGTCCACACTCATTCAATATATGTCTCCTGATAAATTACATTTGT 24096 Query 27051 ATTTAGGTGATTTGAAGAACTCAGAATTTCACTTTTTAAGAAGAGTGCAACACGTTAAAA 27110 | | |||||||||||||| || |||||||| || || |||| ||| ||||||| ||| Sbjct 24097 ACCTGGGTGATTTGAAGAATTCCGAATTTCATTTCTTGCGAAGGGTGAAACACGTAAAAG 24156 Query 27111 AAGTTTGCATGGAAGAAGTAGAAATGGAGGTAATGTTAAACCAATTGTGGATGGAAATTA 27170 | ||||||||||||||| |||||||| || | ||| | | || |||||| |||||| Sbjct 24157 AGGTTTGCATGGAAGAAATAGAAATGAAGATTATGCTGCAGAAAGTGTGGAAGGAAATAC 24216 Query 27171 TCAAAAGACGTAAGTGTATGGAGAAATATGAAGTAGACCACGTTAACGAATACAACAAAG 27230 | || | | || | ||||| | ||||||||||| || || |||||||||||||| Sbjct 24217 GCGAACGTAGAAAATTGATGGAAGAGTATGAAGTAGATCATATTGACGAATACAACAAAT 24276 Query 27231 TGACTACAGAGGAAAAATTACCGTATATTTTAATTTGCATTGATGAGGTTGCGATGTTGG 27290 | | | | || | | ||| ||||| ||| || || || || || | |||||| Sbjct 24277 TAAATCCTGATAATCAGAAACCATATATCTTACTTGCTATCGACGAAGTGGTCATGTTGC 24336 Query 27291 AAGATGAAAACGATAGTATGAAAATTATTAGAAAGATATCAGCTGTCGGGCGATCATTAG 27350 |||||||||| || ||||| || || ||| ||||| || ||||| | || | | Sbjct 24337 AAGATGAAAAAGAATGTATGTCTATAGTTGAAAAAATATCGGCAGTCGGAAGGGCACTTG 24396 Query 27351 GCGTATTTTTAATGTTATCGATGCAGCGGCCGGATGCAACCGTTATCGATGGGAAATTAA 27410 | || ||||||||| || ||||| || || ||||||| || | ||||| || |||| Sbjct 24397 GAGTTTTTTTAATGCTAAGTATGCAACGCCCTGATGCAAAAGTACTGGATGGTAAGTTAA 24456 Query 27411 AAGTGAATATGACAGTCAGAATGGGGTTCCAGTGTGATTCATCGTTAAATGCAGGA--AT 27468 | | |||||||| || |||||||| || | |||||| | | || ||| | || Sbjct 24457 AGCTCAATATGACGGTTAGAATGGGCTTTAAATGTGATAGTACAATTAA--CAGTAATAT 24514 Query 27469 TATAGGTACACCAGGTTCAGAACTGTTAGAGCAATCCGGGCAAATGATTTTCAAATTAAA 27528 ||| ||||| || |||||||||| || |||||||| || |||||||| || || ||||| Sbjct 24515 TATGGGTACTCCTGGTTCAGAACGCTTGGAGCAATCTGGCCAAATGATATTAAAGTTAAA 24574 Query 27529 AGGACTAAAGAAAGTGCAAGCTCCAGAGTTAAAGTTAGAAAAAGCAAAGAAATTAGTGGC 27588 ||| |||||||||| ||| |||| | ||| | ||| ||||| ||||| |||| | Sbjct 24575 TGGATTAAAGAAAGTACAATCTCCTTATTTAGAATTAAGTAAAGCCAAGAAGATAGTTGA 24634 Query 27589 TCCT-------TTCAGAATGACAAAAGAAA-TAGAAGTAAGTA-CTGAAGTGAAAGAGGA 27639 ||| ||| ||| || || | ||| | | | | || | ||| |||| | Sbjct 24635 ACCTTATCGCGTTCCGAAAGAGAATATAAAGTTGCAAAACCTACCACAAG---AAGAAAA 24691 Query 27640 GCCTTTATTTGGGGTGTTAGATGATGAGGAATAGAGATATGGCTATTTTGAAGAATTTGA 27699 | ||||| |||||||||||| |||||||||||||| | || || | || ||||||| Sbjct 24692 TCAATTATTCGGGGTGTTAGATTATGAGGAATAGAGACAAAGCCATACTAAACAATTTGA 24751 Query 27700 CTAAATTTCGTTGTATGTCACGGGACGACATTGTGGAATTACA-CTTCAGCCATTTGAAA 27758 ||| | |||||||| || || |||||| | || || || |||| | || || Sbjct 24752 AGCTTTTTAGATGTATGTCTCGTGATGACATTATTGATTTGCATTTTCAAGGA-TTAAAG 24810 Query 27759 AACCCAATAACATCATGCAATACGGTATTAAAAAGATTACGTAGAGATGGACATGTGGAA 27818 ||| | | |||| || |||||||| | || ||||| | |||||||| |||||||| Sbjct 24811 AACGCGGTTACATGCTGTAATACGGTGATGAAGCGATTAAGAAGAGATGGTCATGTGGAT 24870 Query 27819 GTGAATACTACATTCCAGCCATATGTGTATTTTCCACAACCAAGCGCAATTAGAAAAACA 27878 | |||| | |||||||| | || || || ||| | ||| || || | ||||| Sbjct 24871 GCCAATATCTCGCAACAGCCATACATTTACTTCCCTCAATCCAGCACACTTCGCAAAACT 24930 Query 27879 AGTCAAAAAATACCACATTTCTTAGGCATAGTAGATGCGTATAAACAATTGATCCAAAAT 27938 || ||||| || || || || |||||||| |||||| |||||||| | ||| | || Sbjct 24931 AGCCAAAAGATTCCCCACTTTCTAGGCATATTAGATGTATATAAACAGCTTATCTATTAT 24990 Query 27939 GAGAAACCTAAGATTTTTAAAGTAGAACCGAAGTATGGAAAAGAATATATGGAACCTGAC 27998 || |||||||| | |||||||| || || ||||| || ||||||| ||||||||||| Sbjct 24991 GAAAAACCTAAACTGTTTAAAGTGGAGCCAAAGTACGGTAAAGAATTCATGGAACCTGAT 25050 Query 27999 ATATTTACGATTTGGCGAAAAGCTCCTTTCTTTATAGAAGTACAAAAATCAATATATAGT 28058 |||||| |||||||| | | |||| ||||| || ||||| || | ||| | || || Sbjct 25051 GCATTTACAATTTGGCGTAGATCTCCATTCTTCATTGAAGTCCAGAGGTCAGTTTACAGC 25110 Query 28059 AAATCTGTTATGCAAGAGAAAATAAAACGGTATGAAATGTATTTTTACAGTATGAAGTGG 28118 ||| ||||||||||| |||||||| |||||||| | || || ||||| | | ||| Sbjct 25111 AAAAAAGTTATGCAAGATAAAATAAATAGGTATGAATTATACTTCCACAGTCAGGAATGG 25170 Query 28119 CAAGAAGAATCATGGCAGCCA 28139 || | ||||| ||||||||| Sbjct 25171 CATAACGAATCTTGGCAGCCA 25191 Score = 255 bits (282), Expect = 2e-63 Identities = 185/213 (87%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 35610 TGGATAGTGGCTACCGTGGAGAGGTTGG-GGTGCTGGTTGATAACACTGAAAGACCAATA 35668 ||||||||||||| ||||||| |||||| |||| |||| ||||||||||||||||||||| Sbjct 4402 TGGATAGTGGCTATCGTGGAGCGGTTGGAGGTGTTGGTAGATAACACTGAAAGACCAATA 4461 Query 35669 AGTTTAAATATGCAAGCTCATGTGATTGAAAAAGGAACACGTATTGCTCAAGGCGTCATA 35728 |||||||||||| |||||||||| || ||||||| ||||| || ||||||||||||||| Sbjct 4462 AGTTTAAATATGAAAGCTCATGTAATCAAAAAAGGTACACGCATCGCTCAAGGCGTCATA 4521 Query 35729 GCGCCAGTGGTAACAGCTCATTTCGTTGAAGTGGAAGAACTATCGGTTAGTGAACGTGGC 35788 ||| |||| |||||||||||||| ||||| ||||| || |||| |||||||||||| || Sbjct 4522 GCGTCAGTAGTAACAGCTCATTTTGTTGAGGTGGACGAGCTATTGGTTAGTGAACGAGGT 4581 Query 35789 GTTGGGGGCTTTGGATCTACAGGTACTAAATAA 35821 ||||| || |||| |||||| || || || ||| Sbjct 4582 GTTGGCGGATTTGAATCTACGGGAACGAAGTAA 4614 Score = 87.8 bits (96), Expect = 5e-13 Identities = 80/97 (82%), Gaps = 8/97 (8%) Strand=Plus/Plus Query 39637 AAAGAGCAGCTAGCAAAAGCTAACTGCTC-----AGGTAAT-GGAGAAAGATTACCATGT 39690 ||| |||||||||||| |||||||||||| ||| ||| |||||||||| ||||||| Sbjct 8310 AAAAAGCAGCTAGCAATAGCTAACTGCTCATATAAGGGAATCGGAGAAAGATAACCATGT 8369 Query 39691 CATCTATAGTATTGACGGAATATTGAG-TTTTATTCA 39726 || ||| |||| |||||||||| || ||||||||| Sbjct 8370 -GTCCATATTATTAACGGAATATTAAGTTTTTATTCA 8405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139904177964250