Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq11714 686 0.0 seq6667 556 1e-153 seq7508 102 9e-17 >seq11714 Length=14353 Score = 686 bits (760), Expect = 0.0 Identities = 750/994 (75%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| |||| || || |||||| | || | || ||||| || || || Sbjct 1429 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1370 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046 ||||| |||| ||| | | | || ||| | ||| || ||||| ||||| | |||||| Sbjct 1369 ATGAT-CCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1311 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 ||| || || || ||||| || || ||||| || |||| || || | || |||||||| Sbjct 1310 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1251 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 || || || ||||| |||| ||| ||||| ||||| ||| |||| || ||||| || Sbjct 1250 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCAAT 1191 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 ||||||||| ||| | || |||||||| |||||||| ||||||| |||| |||| Sbjct 1190 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1131 Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286 | ||||| | |||| | | ||| ||||||||||||||||||||| || ||| Sbjct 1130 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1071 Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346 ||| |||||||||||||||||| || ||||| || |||||||| || || || | ||| Sbjct 1070 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 1011 Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406 || ||| || |||| || | |||||||| ||| ||||||| |||||||| || || Sbjct 1010 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 951 Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466 |||||| || ||||||| ||| | || |||||||||||||||||||| || |||||||| Sbjct 950 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 891 Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526 || || ||| | |||||||| ||||| || ||||| || || || ||||| ||||| || Sbjct 890 ATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 831 Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586 ||| |||| |||||| || | | || ||||| |||||||| || || | || Sbjct 830 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 771 Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646 ||||| || || || ||||||||||| || ||||| || || ||||| ||||| ||||| Sbjct 770 TTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTTTGG 711 Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706 || |||| || ||||| ||| |||||||| || ||||| | || |||||| | || Sbjct 710 CCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 651 Query 164707 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAA 164766 || ||||| || || ||||| |||||||||||| | || ||||||||||||| ||||| Sbjct 650 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 591 Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826 ||| || |||||||| |||||||| || | | ||| |||| || || || | || || Sbjct 590 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAATAC 531 Query 164827 CTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGC 164886 ||||| || || | ||||||||| || || |||||||| ||||| || |||||||| Sbjct 530 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 471 Query 164887 TCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 164920 ||||||||||||||| ||||| ||||||| |||| Sbjct 470 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 437 >seq6667 Length=26159 Score = 556 bits (616), Expect = 1e-153 Identities = 721/994 (73%), Gaps = 8/994 (1%) Strand=Plus/Minus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||| || |||||||| || |||||||| || | || ||||| ||| ||| || Sbjct 10097 AGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTT 10038 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| | ||||||||| | || || || || || || || ||||||||||| ||| | Sbjct 10037 GCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTG 9978 Query 165300 GCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC 165359 || ||||||||| | || ||| || ||| | || || || ||||| ||||| || | Sbjct 9977 GCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTTTCGACTCCTGCTAAT 9918 Query 165360 GCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGC 165419 | | | |||||| | || | || ||||||||||| | ||||| || || | || Sbjct 9917 AGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 9858 Query 165420 TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATA 165479 ||||| ||| | || || || ||| ||||||| || |||||||| || || ||| | ||| Sbjct 9857 TGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATA 9798 Query 165480 GGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGT---ATT-CGTCCTTACAA 165535 ||||| ||| | || || |||||||| || ||| || || ||| || ||||| || Sbjct 9797 GGTTTTATGTTACGTCAATTTGAACTTGCTCGA----TCCGTTCAATTGCGGCCTTATAA 9742 Query 165536 TGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCT 165595 ||| || || ||||||||||| |||||||| || ||| ||| || || || ||||| || Sbjct 9741 TGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACT 9682 Query 165596 GGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCT 165655 || ||||| |||||||| || || || || || || || || || |||||| | Sbjct 9681 AGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCAT 9622 Query 165656 GCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGC 165715 ||||| |||||||||| ||||| ||||| |||| || ||||| |||||||| || || Sbjct 9621 CCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGC 9562 Query 165716 AGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTT 165775 ||| | | |||| || |||| | || |||||||||| ||| ||||| |||||||| Sbjct 9561 CGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTT 9502 Query 165776 GTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGA 165835 | |||||||||||| ||||| || ||| || ||| | ||||| | || || Sbjct 9501 ATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGA 9442 Query 165836 AACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAG 165895 ||||||||| |||||||| ||||||||||| ||||| || || ||||| ||||||| Sbjct 9441 AACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCACAAATCTTTGGGGTTGCTTTTTC 9382 Query 165896 CAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAG 165955 |||||| |||||| | || ||||||||| | ||||| || || | || | |||| || Sbjct 9381 CAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAG 9322 Query 165956 TTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGA 166015 | || |||| | | || || || | || || ||||| ||||| || || || ||||| Sbjct 9321 TGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGA 9262 Query 166016 GATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAA 166075 || | || || || ||||| || ||||| || |||||||| ||||| || || | || Sbjct 9261 AATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAA 9202 Query 166076 TGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCC 166135 ||||| | ||||| ||| |||| || ||| || |||||||| ||| || | ||||| Sbjct 9201 CGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 9142 Query 166136 TGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 ||| || || | ||| | || ||||| |||||| Sbjct 9141 TGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 9108 >seq7508 Length=48272 Score = 102 bits (112), Expect = 9e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||||||||| ||| ||| | || ||||||||||| ||||| || | ||| | || Sbjct 20857 GTGTGAAGAAGACGTCTACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGACTTGCCTTA 20798 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||| || ||||| || ||| ||||||||||| |||| || Sbjct 20797 CTCATGCCGTGCTGGTTCTTGCTCTAGCTGCGCCGGTAAAGTCGTCTCTGGCTCCGTTGA 20738 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGA 161697 ||| |||||| |||| ||||||| |||||||| || Sbjct 20737 CCAGTCCGACCAAAGCTTCTTGGACGACGACCAAATGGA 20699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557453818683000