Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq11714 686 0.0
seq6667 556 1e-153
seq7508 102 9e-17
>seq11714
Length=14353
Score = 686 bits (760), Expect = 0.0
Identities = 750/994 (75%), Gaps = 2/994 (0%)
Strand=Plus/Minus
Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987
|||||||||||| |||| || || |||||| | || | || ||||| || || ||
Sbjct 1429 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1370
Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046
||||| |||| ||| | | | || ||| | ||| || ||||| ||||| | ||||||
Sbjct 1369 ATGAT-CCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1311
Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106
||| || || || ||||| || || ||||| || |||| || || | || ||||||||
Sbjct 1310 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1251
Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166
|| || || ||||| |||| ||| ||||| ||||| ||| |||| || ||||| ||
Sbjct 1250 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCAAT 1191
Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226
||||||||| ||| | || |||||||| |||||||| ||||||| |||| ||||
Sbjct 1190 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1131
Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286
| ||||| | |||| | | ||| ||||||||||||||||||||| || |||
Sbjct 1130 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1071
Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346
||| |||||||||||||||||| || ||||| || |||||||| || || || | |||
Sbjct 1070 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 1011
Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406
|| ||| || |||| || | |||||||| ||| ||||||| |||||||| || ||
Sbjct 1010 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 951
Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466
|||||| || ||||||| ||| | || |||||||||||||||||||| || ||||||||
Sbjct 950 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 891
Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526
|| || ||| | |||||||| ||||| || ||||| || || || ||||| ||||| ||
Sbjct 890 ATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 831
Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586
||| |||| |||||| || | | || ||||| |||||||| || || | ||
Sbjct 830 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 771
Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646
||||| || || || ||||||||||| || ||||| || || ||||| ||||| |||||
Sbjct 770 TTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTTTGG 711
Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706
|| |||| || ||||| ||| |||||||| || ||||| | || |||||| | ||
Sbjct 710 CCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 651
Query 164707 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAA 164766
|| ||||| || || ||||| |||||||||||| | || ||||||||||||| |||||
Sbjct 650 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 591
Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826
||| || |||||||| |||||||| || | | ||| |||| || || || | || ||
Sbjct 590 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAATAC 531
Query 164827 CTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGC 164886
||||| || || | ||||||||| || || |||||||| ||||| || ||||||||
Sbjct 530 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 471
Query 164887 TCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 164920
||||||||||||||| ||||| ||||||| ||||
Sbjct 470 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 437
>seq6667
Length=26159
Score = 556 bits (616), Expect = 1e-153
Identities = 721/994 (73%), Gaps = 8/994 (1%)
Strand=Plus/Minus
Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239
|| ||||| || |||||||| || |||||||| || | || ||||| ||| ||| ||
Sbjct 10097 AGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTT 10038
Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299
||| | ||||||||| | || || || || || || || ||||||||||| ||| |
Sbjct 10037 GCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTG 9978
Query 165300 GCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC 165359
|| ||||||||| | || ||| || ||| | || || || ||||| ||||| || |
Sbjct 9977 GCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTTTCGACTCCTGCTAAT 9918
Query 165360 GCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGC 165419
| | | |||||| | || | || ||||||||||| | ||||| || || | ||
Sbjct 9917 AGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 9858
Query 165420 TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATA 165479
||||| ||| | || || || ||| ||||||| || |||||||| || || ||| | |||
Sbjct 9857 TGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATA 9798
Query 165480 GGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGT---ATT-CGTCCTTACAA 165535
||||| ||| | || || |||||||| || ||| || || ||| || ||||| ||
Sbjct 9797 GGTTTTATGTTACGTCAATTTGAACTTGCTCGA----TCCGTTCAATTGCGGCCTTATAA 9742
Query 165536 TGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCT 165595
||| || || ||||||||||| |||||||| || ||| ||| || || || ||||| ||
Sbjct 9741 TGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACT 9682
Query 165596 GGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCT 165655
|| ||||| |||||||| || || || || || || || || || |||||| |
Sbjct 9681 AGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCAT 9622
Query 165656 GCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGC 165715
||||| |||||||||| ||||| ||||| |||| || ||||| |||||||| || ||
Sbjct 9621 CCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGC 9562
Query 165716 AGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTT 165775
||| | | |||| || |||| | || |||||||||| ||| ||||| ||||||||
Sbjct 9561 CGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTT 9502
Query 165776 GTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGA 165835
| |||||||||||| ||||| || ||| || ||| | ||||| | || ||
Sbjct 9501 ATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGA 9442
Query 165836 AACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAG 165895
||||||||| |||||||| ||||||||||| ||||| || || ||||| |||||||
Sbjct 9441 AACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCACAAATCTTTGGGGTTGCTTTTTC 9382
Query 165896 CAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAG 165955
|||||| |||||| | || ||||||||| | ||||| || || | || | |||| ||
Sbjct 9381 CAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAG 9322
Query 165956 TTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGA 166015
| || |||| | | || || || | || || ||||| ||||| || || || |||||
Sbjct 9321 TGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGA 9262
Query 166016 GATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAA 166075
|| | || || || ||||| || ||||| || |||||||| ||||| || || | ||
Sbjct 9261 AATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAA 9202
Query 166076 TGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCC 166135
||||| | ||||| ||| |||| || ||| || |||||||| ||| || | |||||
Sbjct 9201 CGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 9142
Query 166136 TGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169
||| || || | ||| | || ||||| ||||||
Sbjct 9141 TGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 9108
>seq7508
Length=48272
Score = 102 bits (112), Expect = 9e-17
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598
||||||||| ||| ||| | || ||||||||||| ||||| || | ||| | ||
Sbjct 20857 GTGTGAAGAAGACGTCTACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGACTTGCCTTA 20798
Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658
||| || ||||| || |||| || ||||| || ||| ||||||||||| |||| ||
Sbjct 20797 CTCATGCCGTGCTGGTTCTTGCTCTAGCTGCGCCGGTAAAGTCGTCTCTGGCTCCGTTGA 20738
Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGA 161697
||| |||||| |||| ||||||| |||||||| ||
Sbjct 20737 CCAGTCCGACCAAAGCTTCTTGGACGACGACCAAATGGA 20699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557453818683000
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