Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq11714 657 0.0 seq6667 545 3e-150 >seq11714 Length=14353 Score = 657 bits (728), Expect = 0.0 Identities = 743/993 (75%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||||||| ||||| ||| | |||||||| || | || ||||| ||||| || Sbjct 1429 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1370 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTTCATCGTCGCTTTCGTCGCTGCTCCT 177717 ||||||||||| | | | || || | ||| || |||| ||| | ||||||||| Sbjct 1369 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1310 Query 177718 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAAC 177777 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1309 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1250 Query 177778 ATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATC 177837 || ||||| ||||| || ||||| ||||| ||||||||| | || || || || ||| Sbjct 1249 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCAATC 1190 Query 177838 TGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATC 177897 |||||||| || || | ||||| ||||| ||||| || ||||||| |||| || | Sbjct 1189 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1130 Query 177898 TTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCGC 177957 | ||||| | | ||| | | || ||||||||||||||||||||| || ||| Sbjct 1129 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1070 Query 177958 CTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCT 178017 || ||||||||||| ||||| ||| ||||| || ||||| || || || ||| ||||| Sbjct 1069 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 1010 Query 178018 GTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATC 178077 || ||| | | || || | |||||||| ||| ||||| | |||||| || || ||| Sbjct 1009 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 950 Query 178078 AGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 178137 ||| || ||||||| ||| |||| ||||| || ||||||||||| || |||||||| Sbjct 949 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 890 Query 178138 TTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGT 178197 || |||||||| ||||| || ||||| || || || || || || ||||| ||||| ||| Sbjct 889 TTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 830 Query 178198 TCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATGG 178256 || |||| ||||| | | | | || | |||||||| || || ||| | || | || Sbjct 829 TCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 771 Query 178257 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGG 178316 ||||| ||||| ||||||||||| || || ||||| || |||||||||||||| || || Sbjct 770 TTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTTTGG 711 Query 178317 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 178376 || ||||||| ||||| || |||||||| || ||||| | || |||||| | || Sbjct 710 CCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 651 Query 178377 AGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAA 178436 || ||||| || || ||||| ||||| |||||| | ||| ||||||||||||| ||||| Sbjct 650 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 591 Query 178437 CCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACAC 178496 ||| || |||||||| |||||||| || | | |||||||| || || | || || Sbjct 590 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAATAC 531 Query 178497 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGC 178556 ||||| || || | ||||||||| |||||||||||||| ||||| || |||||||| Sbjct 530 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 471 Query 178557 TCACAACTTCCCTCTTGACCTCGCTGCTGCTGA 178589 ||||||||||||||| ||||| ||||||| ||| Sbjct 470 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 438 >seq6667 Length=26159 Score = 545 bits (604), Expect = 3e-150 Identities = 731/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 |||||| | | ||||||||| | | | || || || |||||||| |||||||| ||| Sbjct 10124 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGT 10065 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 || | || || ||| ||| || | || | || |||||| |||| || ||||| || Sbjct 10064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 10005 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018 || || || ||||||||||| || | ||| ||| ||| | || || || ||||| | Sbjct 10004 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 9945 Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078 || ||||| || || ||||||||| | | | | |||||| | | | || |||||| Sbjct 9944 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGT 9885 Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138 || ||||| || |||||||| || ||| ||| | || || || ||| ||||||| Sbjct 9884 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 9825 Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG- 179197 || |||||||| || ||||| | |||||||| ||| | || || |||||| | || || Sbjct 9824 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 9765 Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257 || || | | || ||||| ||||||||||| || ||||||||||||||||| ||||| Sbjct 9764 TCCGTTCAAT-TGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 9706 Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317 ||||| || || || ||||| || || || || |||||||||||||| ||||| Sbjct 9705 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 9646 Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377 || || || || || || ||| | ||||| | || || || || || ||||| | || Sbjct 9645 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 9586 Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437 ||| || || |||||||| || || ||| | ||||||| || |||| || || ||||| Sbjct 9585 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCA 9526 Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497 ||||||||| ||||| || || | |||||||| |||| ||||||||||| || Sbjct 9525 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 9466 Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557 || | || || |||| || || || ||||| ||||| || || |||||||| ||||| Sbjct 9465 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTC 9406 Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617 || |||||||| | || || |||||| |||||| |||||||||||||||| ||||| Sbjct 9405 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 9346 Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677 || || | ||| | |||| | |||| | | || || || | ||||| | Sbjct 9345 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACG 9286 Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737 || |||||||| ||||| || || ||| | || || || ||||| || || ||||| || Sbjct 9285 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 9226 Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797 |||||| || || || || || || |||||| | |||||||||||||| | ||||| Sbjct 9225 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 9166 Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || ||||||||| || |||| ||||| || || | ||| | || |||||||| Sbjct 9165 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 9112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596092715754000