Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_031935.1
Length=186386
Score E
Sequences producing significant alignments: (Bits) Value
seq11714 657 0.0
seq6667 545 3e-150
>seq11714
Length=14353
Score = 657 bits (728), Expect = 0.0
Identities = 743/993 (75%), Gaps = 2/993 (0%)
Strand=Plus/Minus
Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657
|||||||||||| ||||| ||| | |||||||| || | || ||||| ||||| ||
Sbjct 1429 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1370
Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTTCATCGTCGCTTTCGTCGCTGCTCCT 177717
||||||||||| | | | || || | ||| || |||| ||| | |||||||||
Sbjct 1369 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1310
Query 177718 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAAC 177777
|| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 1309 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1250
Query 177778 ATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATC 177837
|| ||||| ||||| || ||||| ||||| ||||||||| | || || || || |||
Sbjct 1249 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCAATC 1190
Query 177838 TGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATC 177897
|||||||| || || | ||||| ||||| ||||| || ||||||| |||| || |
Sbjct 1189 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1130
Query 177898 TTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCGC 177957
| ||||| | | ||| | | || ||||||||||||||||||||| || |||
Sbjct 1129 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1070
Query 177958 CTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCT 178017
|| ||||||||||| ||||| ||| ||||| || ||||| || || || ||| |||||
Sbjct 1069 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 1010
Query 178018 GTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATC 178077
|| ||| | | || || | |||||||| ||| ||||| | |||||| || || |||
Sbjct 1009 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 950
Query 178078 AGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 178137
||| || ||||||| ||| |||| ||||| || ||||||||||| || ||||||||
Sbjct 949 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 890
Query 178138 TTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGT 178197
|| |||||||| ||||| || ||||| || || || || || || ||||| ||||| |||
Sbjct 889 TTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 830
Query 178198 TCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATGG 178256
|| |||| ||||| | | | | || | |||||||| || || ||| | || | ||
Sbjct 829 TCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 771
Query 178257 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGG 178316
||||| ||||| ||||||||||| || || ||||| || |||||||||||||| || ||
Sbjct 770 TTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTTTGG 711
Query 178317 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 178376
|| ||||||| ||||| || |||||||| || ||||| | || |||||| | ||
Sbjct 710 CCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 651
Query 178377 AGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAA 178436
|| ||||| || || ||||| ||||| |||||| | ||| ||||||||||||| |||||
Sbjct 650 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 591
Query 178437 CCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACAC 178496
||| || |||||||| |||||||| || | | |||||||| || || | || ||
Sbjct 590 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGCGTTATTAATAC 531
Query 178497 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGC 178556
||||| || || | ||||||||| |||||||||||||| ||||| || ||||||||
Sbjct 530 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 471
Query 178557 TCACAACTTCCCTCTTGACCTCGCTGCTGCTGA 178589
||||||||||||||| ||||| ||||||| |||
Sbjct 470 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 438
>seq6667
Length=26159
Score = 545 bits (604), Expect = 3e-150
Identities = 731/1014 (72%), Gaps = 2/1014 (0%)
Strand=Plus/Minus
Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898
|||||| | | ||||||||| | | | || || || |||||||| |||||||| |||
Sbjct 10124 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGT 10065
Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958
|| | || || ||| ||| || | || | || |||||| |||| || ||||| ||
Sbjct 10064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 10005
Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018
|| || || ||||||||||| || | ||| ||| ||| | || || || ||||| |
Sbjct 10004 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 9945
Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078
|| ||||| || || ||||||||| | | | | |||||| | | | || ||||||
Sbjct 9944 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGT 9885
Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138
|| ||||| || |||||||| || ||| ||| | || || || ||| |||||||
Sbjct 9884 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 9825
Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG- 179197
|| |||||||| || ||||| | |||||||| ||| | || || |||||| | || ||
Sbjct 9824 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 9765
Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257
|| || | | || ||||| ||||||||||| || ||||||||||||||||| |||||
Sbjct 9764 TCCGTTCAAT-TGCGGCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 9706
Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317
||||| || || || ||||| || || || || |||||||||||||| |||||
Sbjct 9705 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 9646
Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377
|| || || || || || ||| | ||||| | || || || || || ||||| | ||
Sbjct 9645 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 9586
Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437
||| || || |||||||| || || ||| | ||||||| || |||| || || |||||
Sbjct 9585 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCCCTGCTATGCGCTATTCA 9526
Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497
||||||||| ||||| || || | |||||||| |||| ||||||||||| ||
Sbjct 9525 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 9466
Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557
|| | || || |||| || || || ||||| ||||| || || |||||||| |||||
Sbjct 9465 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTC 9406
Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617
|| |||||||| | || || |||||| |||||| |||||||||||||||| |||||
Sbjct 9405 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 9346
Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677
|| || | ||| | |||| | |||| | | || || || | ||||| |
Sbjct 9345 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACG 9286
Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737
|| |||||||| ||||| || || ||| | || || || ||||| || || ||||| ||
Sbjct 9285 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 9226
Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797
|||||| || || || || || || |||||| | |||||||||||||| | |||||
Sbjct 9225 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 9166
Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851
|| ||||||||| || |||| ||||| || || | ||| | || ||||||||
Sbjct 9165 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 9112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596092715754000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |