Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq7697 127 2e-24
seq24711 100 3e-16
seq18044 98.7 9e-16
seq16226 95.1 1e-14
>seq7697
Length=17472
Score = 127 bits (140), Expect = 2e-24
Identities = 169/231 (73%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||| ||||| || || ||||||||| ||||||||||| |
Sbjct 10193 CCACCACGAAGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTATAGTCTGCT 10252
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || |||||||| ||||| || || || | ||| ||||| | ||
Sbjct 10253 AGGGTGCGTCCGTCTTCTAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGG 10312
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | ||| |||||| ||| | || || | ||| | | |||||| ||| |||
Sbjct 10313 ATTCCCTCTTTGTCC-TGAATCTTAGCCTTGACGTTATCAATAGTGTCAGAGCT---CTC 10368
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||||| || || |||||||| || || ||||| || |||||||||||
Sbjct 10369 CACCTCCAAAGTGATTGTTTTACCGGTAAGGGTCTTCACAAAAATCTGCAT 10419
>seq24711
Length=27656
Score = 100 bits (110), Expect = 3e-16
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| ||||||| || | ||| ||||||||| || || ||||| |
Sbjct 5334 CCACCACGGAGACGCAACACCAAGTGTAATGTGGACTCCTTCTGGATATTGTAGTCAGCC 5275
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || | || || |||||||| || || || || || ||||| ||||||| ||
Sbjct 5274 AAAGTCCGACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGGTCCGGTGGG 5215
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812
| | |||||||||| ||| || ||||| || | || | ||| || || ||||
Sbjct 5214 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCA-ATTGTGTCT-GAGCTCTCC 5158
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || || || || || |||| ||||| ||||||||||||||
Sbjct 5157 ACCTCAAGAGTGATTGTCTTCCCGGTCAAGGTCTTAACGAAAATCTGCAT 5108
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| ||||||| |||| || |||||| || || || ||||| |
Sbjct 5106 CCACCACGAAGACGCAACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCAGCC 5047
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || | || ||||||||||| ||||| || |||| | ||| ||||||| |||
Sbjct 5046 AAGGTACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGA 4987
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||| || ||| ||| |||| ||| | | | |||||| ||||||
Sbjct 4986 ATACCTTCCTTATCTTGGATCTTTGCCTTC-ACGTTGTCAATAGTGTCAGAACTCTCCAC 4928
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || ||||| |||| ||||| ||||| || |||||
Sbjct 4927 CTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 4880
Score = 82.4 bits (90), Expect = 7e-11
Identities = 159/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || ||| ||||||||||| || || |
Sbjct 5562 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGCC 5503
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || |||||||| || ||||| || || ||||| ||||||| |||
Sbjct 5502 AGTGTACGACCATCCTCAAGCTGCTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGA 5443
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | ||||| ||| ||| || |||| ||| | | ||| || ||| |||
Sbjct 5442 ATACCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTATCAATAGTATCAGAGCT---CTC 5387
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || | || || || || || || || ||||| ||||||||||||||
Sbjct 5386 AACTTCAAGTGTGATTGTCTTGCCAGTAAGAGTCTTCACGAAAATCTGCAT 5336
>seq18044
Length=6213
Score = 98.7 bits (108), Expect = 9e-16
Identities = 152/213 (71%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| |||||| || |||||||||||||| || || | ||||| || | || |||
Sbjct 3096 ACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTTCGACCATCCTCG 3155
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||| || ||||| || ||||| | ||| ||||||| || | | ||||||| | ||
Sbjct 3156 AGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGT-CTTG 3214
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829
| |||| |||| ||| | | | ||||| ||| ||| || || | || || ||
Sbjct 3215 AATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCT---CTCGACTTCTAGGGTAATTGT 3271
Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || ||||| || || ||||||||
Sbjct 3272 TTTACCAGTAAGAGTCTTGACAAATATCTGCAT 3304
>seq16226
Length=39664
Score = 95.1 bits (104), Expect = 1e-14
Identities = 162/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| || |||| || || || ||||||||||||||| |||||||
Sbjct 11138 CCACCACGAAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCT 11197
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || | || || |||||||| || || || || || ||||| ||||||| ||
Sbjct 11198 AAGGTACGACCATCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGG 11257
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | || |||||| || | || || | ||| | | | |||||| ||| |||
Sbjct 11258 ATACCTTCTTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATAGTGTCTGAGCT---CTC 11313
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || || || ||||| |||| ||||| ||||| || |||||
Sbjct 11314 AACCTCAAGGGTAATGGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCAT 11364
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || ||||||||| ||||| ||||| |
Sbjct 10910 CCACCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 10969
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| | || || |||||||| || ||||| || || ||||| ||||||| |||
Sbjct 10970 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGAGGA 11029
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812
| | ||||||||| ||| || ||| | | | || | ||| | ||| |||
Sbjct 11030 ATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CATTGTCA-ATTGTGTC-CGAGCTCTCA 11086
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || || || || || || || ||||| ||||||||||||||
Sbjct 11087 ACCTCAAGGGTAATGGTCTTTCCGGTGAGAGTCTTCACGAAAATCTGCAT 11136
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| ||||||| || || ||| ||| ||||| || || ||||| |
Sbjct 11822 CCACCACGAAGACGCAACACCAAGTGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGCC 11881
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | |||| || || ||||| |||||||| |||| | ||| ||||||| |||
Sbjct 11882 AGAGTTCTACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 11941
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814
| | ||| |||||| ||| || ||| | || | || | ||||| || ||
Sbjct 11942 ATACCCTCTTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCAAC 12000
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || |||| ||||| || |||||||||||
Sbjct 12001 TTCCAAGGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 12048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462137715030000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |