Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7697 127 2e-24 seq24711 100 3e-16 seq18044 98.7 9e-16 seq16226 95.1 1e-14 >seq7697 Length=17472 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || || ||||||||| ||||||||||| | Sbjct 10193 CCACCACGAAGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTATAGTCTGCT 10252 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||| ||||| || || || | ||| ||||| | || Sbjct 10253 AGGGTGCGTCCGTCTTCTAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGG 10312 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||| |||||| ||| | || || | ||| | | |||||| ||| ||| Sbjct 10313 ATTCCCTCTTTGTCC-TGAATCTTAGCCTTGACGTTATCAATAGTGTCAGAGCT---CTC 10368 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || |||||||| || || ||||| || ||||||||||| Sbjct 10369 CACCTCCAAAGTGATTGTTTTACCGGTAAGGGTCTTCACAAAAATCTGCAT 10419 >seq24711 Length=27656 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || | ||| ||||||||| || || ||||| | Sbjct 5334 CCACCACGGAGACGCAACACCAAGTGTAATGTGGACTCCTTCTGGATATTGTAGTCAGCC 5275 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || |||||||| || || || || || ||||| ||||||| || Sbjct 5274 AAAGTCCGACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGGTCCGGTGGG 5215 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | | |||||||||| ||| || ||||| || | || | ||| || || |||| Sbjct 5214 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCA-CGTTGTCA-ATTGTGTCT-GAGCTCTCC 5158 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || |||| ||||| |||||||||||||| Sbjct 5157 ACCTCAAGAGTGATTGTCTTCCCGGTCAAGGTCTTAACGAAAATCTGCAT 5108 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| |||| || |||||| || || || ||||| | Sbjct 5106 CCACCACGAAGACGCAACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCAGCC 5047 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || ||||||||||| ||||| || |||| | ||| ||||||| ||| Sbjct 5046 AAGGTACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGA 4987 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| || ||| ||| |||| ||| | | | |||||| |||||| Sbjct 4986 ATACCTTCCTTATCTTGGATCTTTGCCTTC-ACGTTGTCAATAGTGTCAGAACTCTCCAC 4928 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || ||||| |||| ||||| ||||| || ||||| Sbjct 4927 CTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 4880 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||| ||||||||||| || || | Sbjct 5562 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGCC 5503 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 5502 AGTGTACGACCATCCTCAAGCTGCTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGA 5443 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||| ||| ||| || |||| ||| | | ||| || ||| ||| Sbjct 5442 ATACCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTATCAATAGTATCAGAGCT---CTC 5387 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || || || || ||||| |||||||||||||| Sbjct 5386 AACTTCAAGTGTGATTGTCTTGCCAGTAAGAGTCTTCACGAAAATCTGCAT 5336 >seq18044 Length=6213 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| |||||| || |||||||||||||| || || | ||||| || | || ||| Sbjct 3096 ACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTTCGACCATCCTCG 3155 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || ||||| | ||| ||||||| || | | ||||||| | || Sbjct 3156 AGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGT-CTTG 3214 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 | |||| |||| ||| | | | ||||| ||| ||| || || | || || || Sbjct 3215 AATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCT---CTCGACTTCTAGGGTAATTGT 3271 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || ||||| || || |||||||| Sbjct 3272 TTTACCAGTAAGAGTCTTGACAAATATCTGCAT 3304 >seq16226 Length=39664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || || ||||||||||||||| ||||||| Sbjct 11138 CCACCACGAAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCT 11197 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || |||||||| || || || || || ||||| ||||||| || Sbjct 11198 AAGGTACGACCATCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGG 11257 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | || |||||| || | || || | ||| | | | |||||| ||| ||| Sbjct 11258 ATACCTTCTTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATAGTGTCTGAGCT---CTC 11313 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || ||||| |||| ||||| ||||| || ||||| Sbjct 11314 AACCTCAAGGGTAATGGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCAT 11364 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| ||||| | Sbjct 10910 CCACCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 10969 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 10970 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGAGGA 11029 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | | ||||||||| ||| || ||| | | | || | ||| | ||| ||| Sbjct 11030 ATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CATTGTCA-ATTGTGTC-CGAGCTCTCA 11086 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || || || ||||| |||||||||||||| Sbjct 11087 ACCTCAAGGGTAATGGTCTTTCCGGTGAGAGTCTTCACGAAAATCTGCAT 11136 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || ||| ||| ||||| || || ||||| | Sbjct 11822 CCACCACGAAGACGCAACACCAAGTGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGCC 11881 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || || ||||| |||||||| |||| | ||| ||||||| ||| Sbjct 11882 AGAGTTCTACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 11941 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | ||| |||||| ||| || ||| | || | || | ||||| || || Sbjct 11942 ATACCCTCTTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCAAC 12000 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || |||| ||||| || ||||||||||| Sbjct 12001 TTCCAAGGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 12048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462137715030000