Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq27195 100 6e-16
seq254649 98.7 2e-15
seq237759 98.7 2e-15
seq218295 98.7 2e-15
seq216755 98.7 2e-15
seq214452 98.7 2e-15
seq179722 98.7 2e-15
seq157222 98.7 2e-15
seq143658 98.7 2e-15
seq143645 98.7 2e-15
seq128071 98.7 2e-15
seq99723 98.7 2e-15
seq60654 98.7 2e-15
seq26137 98.7 2e-15
seq22296 98.7 2e-15
seq20076 98.7 2e-15
seq19889 98.7 2e-15
seq19888 98.7 2e-15
seq19699 98.7 2e-15
seq146431 96.9 7e-15
seq142873 95.1 3e-14
seq73375 95.1 3e-14
seq135121 89.7 1e-12
seq68607 84.2 5e-11
seq36044 84.2 5e-11
>seq27195
Length=13093
Score = 100 bits (110), Expect = 6e-16
Identities = 147/202 (73%), Gaps = 7/202 (3%)
Strand=Plus/Plus
Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809
|||| | ||| || || || || || | || ||||| ||||||||||| || | |||
Sbjct 8651 TTCTGTATGTTTCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCA 8710
Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCA-GACGT-CGTCGACTGGCGTGAGA 229867
| ||||||||| | || ||||| ||| | | || |||| ||| |||||| ||||
Sbjct 8711 TCGTTCTGGACCGCCGAAGAAGTAGATCT-ATCACAAGACGGACGT-GACTGG---GAGA 8765
Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927
| ||||| |||| |||||||| |||||||||||| |||| | ||| ||||| | || |
Sbjct 8766 ATCTCAACGACGGAGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTG 8825
Query 229928 ATGGTATTGTGATGGAAAATCT 229949
| || || || | || |||||
Sbjct 8826 ACGGAATCGTTCTAGAGAATCT 8847
>seq254649
Length=1080
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 289 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 230
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 229 CCCACGGTGGGC 218
>seq237759
Length=6634
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 6177 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6236
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 6237 CCCACGGTGGGC 6248
>seq218295
Length=1062
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 307 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 248
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 247 CCCACGGTGGGC 236
>seq216755
Length=4649
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 325 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 266
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 265 CCCACGGTGGGC 254
>seq214452
Length=15074
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 10899 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10840
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 10839 CCCACGGTGGGC 10828
>seq179722
Length=7207
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 2733 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2792
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 2793 CCCACGGTGGGC 2804
>seq157222
Length=12305
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 6560 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6619
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 6620 CCCACGGTGGGC 6631
>seq143658
Length=6152
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 2011 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2070
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 2071 CCCACGGTGGGC 2082
>seq143645
Length=11647
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 2534 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2593
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 2594 CCCACGGTGGGC 2605
>seq128071
Length=9728
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 6845 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6786
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 6785 CCCACGGTGGGC 6774
>seq99723
Length=10475
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 3611 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3552
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 3551 CCCACGGTGGGC 3540
>seq60654
Length=6606
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 4518 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4459
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 4458 CCCACGGTGGGC 4447
>seq26137
Length=25550
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 15931 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15872
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 15871 CCCACGGTGGGC 15860
>seq22296
Length=26273
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 18814 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18873
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 18874 CCCACGGTGGGC 18885
>seq20076
Length=3834
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 2832 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2773
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 2772 CCCACGGTGGGC 2761
>seq19889
Length=6968
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 1802 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1861
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1862 CCCACGGTGGGC 1873
>seq19888
Length=26149
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 6826 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6767
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 6766 CCCACGGTGGGC 6755
>seq19699
Length=30775
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 18748 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18807
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 18808 CCCACGGTGGGC 18819
>seq146431
Length=15796
Score = 96.9 bits (106), Expect = 7e-15
Identities = 146/202 (72%), Gaps = 7/202 (3%)
Strand=Plus/Minus
Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809
|||| | ||| || || || || || | || ||||| ||||||||||| || | |||
Sbjct 4708 TTCTGTATGTTTCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCA 4649
Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCA-GACGT-CGTCGACTGGCGTGAGA 229867
| ||||||||| | || ||||| ||| | | || |||| ||| |||||| || |
Sbjct 4648 TCCTTCTGGACCGCCGAAGAAGTAGATCT-ATCACAAGACGGACGT-GACTGG---GAAA 4594
Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927
| ||||| |||| |||||||| |||||||||||| |||| | || ||||| | || |
Sbjct 4593 ATCTCAACGACGGAGAACGTCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCATCTG 4534
Query 229928 ATGGTATTGTGATGGAAAATCT 229949
| || || || | ||||||||
Sbjct 4533 ACGGAATCGTCCTCGAAAATCT 4512
Score = 86.0 bits (94), Expect = 1e-11
Identities = 146/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGCTGAACTTATGGG 230474
||||| | || ||||| |||| || ||| || |||| |||||| || | | ||| |
Sbjct 4045 GAGTTTGTGTGCGACGCGCTTCCGTG-CGCGTTGGTTGGGATGAACCGTGGATTGATGAG 3987
Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534
||||| || || || || || || | |||| | ||| ||||| |||| || |||||
Sbjct 3986 TCAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGCTACGGTAAGGTGTA 3927
Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594
|| || || |||| | |||||| | ||||||||||||||||| || || ||
Sbjct 3926 TGGTGCTTCTAATCCGTTTGATTGGATGGAGTTAATTTCGCTTCAAGGGAAAACTAATTT 3867
Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGA 230623
|| || ||| | || |||| |||||||
Sbjct 3866 TTTTGAGAAGAGAGTTGGTGATTATCAGA 3838
>seq142873
Length=17394
Score = 95.1 bits (104), Expect = 3e-14
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 13438 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13379
Query 165770 CCCACGATGG 165779
|||||| |||
Sbjct 13378 CCCACGGTGG 13369
>seq73375
Length=13234
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || |||||||||||||||| |
Sbjct 4288 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 4347
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 4348 CCCACGGTGGGC 4359
>seq135121
Length=18504
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||| |||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 18104 GCCCGTCTATCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18045
Query 165770 CCCACGATGGGC 165781
|||| | |||||
Sbjct 18044 CCCATGGTGGGC 18033
>seq68607
Length=1881
Score = 84.2 bits (92), Expect = 5e-11
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand=Plus/Minus
Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317
|||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 915 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 858
Query 165318 GTTGG 165322
|||||
Sbjct 857 GTTGG 853
>seq36044
Length=20961
Score = 84.2 bits (92), Expect = 5e-11
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand=Plus/Minus
Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317
|||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 9634 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 9577
Query 165318 GTTGG 165322
|||||
Sbjct 9576 GTTGG 9572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1054202160041640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |