Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq27195 100 6e-16 seq254649 98.7 2e-15 seq237759 98.7 2e-15 seq218295 98.7 2e-15 seq216755 98.7 2e-15 seq214452 98.7 2e-15 seq179722 98.7 2e-15 seq157222 98.7 2e-15 seq143658 98.7 2e-15 seq143645 98.7 2e-15 seq128071 98.7 2e-15 seq99723 98.7 2e-15 seq60654 98.7 2e-15 seq26137 98.7 2e-15 seq22296 98.7 2e-15 seq20076 98.7 2e-15 seq19889 98.7 2e-15 seq19888 98.7 2e-15 seq19699 98.7 2e-15 seq146431 96.9 7e-15 seq142873 95.1 3e-14 seq73375 95.1 3e-14 seq135121 89.7 1e-12 seq68607 84.2 5e-11 seq36044 84.2 5e-11 >seq27195 Length=13093 Score = 100 bits (110), Expect = 6e-16 Identities = 147/202 (73%), Gaps = 7/202 (3%) Strand=Plus/Plus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||| || || || || || | || ||||| ||||||||||| || | ||| Sbjct 8651 TTCTGTATGTTTCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCA 8710 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCA-GACGT-CGTCGACTGGCGTGAGA 229867 | ||||||||| | || ||||| ||| | | || |||| ||| |||||| |||| Sbjct 8711 TCGTTCTGGACCGCCGAAGAAGTAGATCT-ATCACAAGACGGACGT-GACTGG---GAGA 8765 Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927 | ||||| |||| |||||||| |||||||||||| |||| | ||| ||||| | || | Sbjct 8766 ATCTCAACGACGGAGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTG 8825 Query 229928 ATGGTATTGTGATGGAAAATCT 229949 | || || || | || ||||| Sbjct 8826 ACGGAATCGTTCTAGAGAATCT 8847 >seq254649 Length=1080 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 289 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 230 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 229 CCCACGGTGGGC 218 >seq237759 Length=6634 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6177 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6236 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6237 CCCACGGTGGGC 6248 >seq218295 Length=1062 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 307 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 248 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 247 CCCACGGTGGGC 236 >seq216755 Length=4649 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 325 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 266 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 265 CCCACGGTGGGC 254 >seq214452 Length=15074 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 10899 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10840 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10839 CCCACGGTGGGC 10828 >seq179722 Length=7207 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2733 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2792 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2793 CCCACGGTGGGC 2804 >seq157222 Length=12305 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6560 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6619 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6620 CCCACGGTGGGC 6631 >seq143658 Length=6152 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2011 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2070 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2071 CCCACGGTGGGC 2082 >seq143645 Length=11647 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2534 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2593 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2594 CCCACGGTGGGC 2605 >seq128071 Length=9728 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6845 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6786 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6785 CCCACGGTGGGC 6774 >seq99723 Length=10475 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3611 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3552 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3551 CCCACGGTGGGC 3540 >seq60654 Length=6606 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4518 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4459 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4458 CCCACGGTGGGC 4447 >seq26137 Length=25550 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 15931 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15872 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 15871 CCCACGGTGGGC 15860 >seq22296 Length=26273 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18814 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18873 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18874 CCCACGGTGGGC 18885 >seq20076 Length=3834 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2832 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2773 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2772 CCCACGGTGGGC 2761 >seq19889 Length=6968 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1802 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1861 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1862 CCCACGGTGGGC 1873 >seq19888 Length=26149 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6826 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6767 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6766 CCCACGGTGGGC 6755 >seq19699 Length=30775 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18748 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18807 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18808 CCCACGGTGGGC 18819 >seq146431 Length=15796 Score = 96.9 bits (106), Expect = 7e-15 Identities = 146/202 (72%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||| || || || || || | || ||||| ||||||||||| || | ||| Sbjct 4708 TTCTGTATGTTTCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCA 4649 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCA-GACGT-CGTCGACTGGCGTGAGA 229867 | ||||||||| | || ||||| ||| | | || |||| ||| |||||| || | Sbjct 4648 TCCTTCTGGACCGCCGAAGAAGTAGATCT-ATCACAAGACGGACGT-GACTGG---GAAA 4594 Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927 | ||||| |||| |||||||| |||||||||||| |||| | || ||||| | || | Sbjct 4593 ATCTCAACGACGGAGAACGTCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCATCTG 4534 Query 229928 ATGGTATTGTGATGGAAAATCT 229949 | || || || | |||||||| Sbjct 4533 ACGGAATCGTCCTCGAAAATCT 4512 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGCTGAACTTATGGG 230474 ||||| | || ||||| |||| || ||| || |||| |||||| || | | ||| | Sbjct 4045 GAGTTTGTGTGCGACGCGCTTCCGTG-CGCGTTGGTTGGGATGAACCGTGGATTGATGAG 3987 Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534 ||||| || || || || || || | |||| | ||| ||||| |||| || ||||| Sbjct 3986 TCAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGCTACGGTAAGGTGTA 3927 Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594 || || || |||| | |||||| | ||||||||||||||||| || || || Sbjct 3926 TGGTGCTTCTAATCCGTTTGATTGGATGGAGTTAATTTCGCTTCAAGGGAAAACTAATTT 3867 Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 || || ||| | || |||| ||||||| Sbjct 3866 TTTTGAGAAGAGAGTTGGTGATTATCAGA 3838 >seq142873 Length=17394 Score = 95.1 bits (104), Expect = 3e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 13438 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13379 Query 165770 CCCACGATGG 165779 |||||| ||| Sbjct 13378 CCCACGGTGG 13369 >seq73375 Length=13234 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 4288 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 4347 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4348 CCCACGGTGGGC 4359 >seq135121 Length=18504 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||| |||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18104 GCCCGTCTATCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18045 Query 165770 CCCACGATGGGC 165781 |||| | ||||| Sbjct 18044 CCCATGGTGGGC 18033 >seq68607 Length=1881 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317 |||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| Sbjct 915 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 858 Query 165318 GTTGG 165322 ||||| Sbjct 857 GTTGG 853 >seq36044 Length=20961 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317 |||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| Sbjct 9634 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 9577 Query 165318 GTTGG 165322 ||||| Sbjct 9576 GTTGG 9572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1054202160041640