Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_000866.4
Length=168903
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 224 1e-53
seq249645 105 7e-18
seq127984 89.7 6e-13
>seq26767
Length=1149
Score = 224 bits (248), Expect = 1e-53
Identities = 323/452 (71%), Gaps = 10/452 (2%)
Strand=Plus/Plus
Query 141661 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 141720
|||||| | ||| | ||| || ||||||| | ||||| | | |||||||| | |||
Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92
Query 141721 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 141780
| |||||||| ||||| | | | |||||| ||| |||||||| || |||||| |
Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152
Query 141781 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 141840
||| || || || || | || ||| || || ||||| ||||| || ||| | ||||||||
Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212
Query 141841 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 141900
||| ||||||||||| ||||||||| | |||| || | | ||| | |||| |
Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272
Query 141901 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 141960
|||||||| | ||| | |||||||||||||| || |||| ||| | ||||| |||||
Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332
Query 141961 TGA---AGCAGAAGCCTTATTGATAGACTTCAATGAATCTCCTGCC--TCAATAACAACA 142015
|| || || ||| ||| ||||| | | || | || | | ||||| | ||||
Sbjct 333 AGAACTAGTAGTAGCGTTA---ATAGAATCTA--GATTATCATCACATTCAATTAAAACA 387
Query 142016 CATGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAA 142075
||||| ||||| |||||||| ||||| | | |||| |||||| || || || || |||
Sbjct 388 CATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAA 447
Query 142076 ATCTGTCGAGTTGATACTGCTTCATAAAAACG 142107
|| | |||||| | || | |||||||||
Sbjct 448 ATTTTGAAAGTTGAAATGGCATTATAAAAACG 479
>seq249645
Length=476466
Score = 105 bits (116), Expect = 7e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 141677 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 141736
|| || || || ||||||||||| | ||||| ||||| || || ||||||||| |
Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891
Query 141737 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 141796
|| || | |||||||| |||||||| | || || | || ||||| ||||||
Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831
Query 141797 CGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 141856
|| | ||||| ||||| || ||||||| || || || || ||| |||||||||||
Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771
Query 141857 ACACCAGTATGGCGTACTTCACC 141879
|||||||| || |||||||
Sbjct 264770 CAGCCAGTATGCTGTGCTTCACC 264748
>seq127984
Length=21361
Score = 89.7 bits (98), Expect = 6e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 72286 TAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 72345
||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| |
Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856
Query 72346 ACCATTATACGATATCCGCAAA 72367
|||| || || | | |||||||
Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 538556603129440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |