Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_000871.1 Length=37370 Score E Sequences producing significant alignments: (Bits) Value seq114485 149 1e-31 seq219614 113 1e-20 >seq114485 Length=730 Score = 149 bits (164), Expect = 1e-31 Identities = 439/662 (66%), Gaps = 31/662 (5%) Strand=Plus/Plus Query 2854 TCTGGGCAAGTAAAAGTACCCAATAGACAGTTTATCCAAATTTCTACGGCTTATCCCAAT 2913 || || ||||| |||||| || | || ||| | || ||||| || ||||||||||| Sbjct 60 TCCGGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAAA 119 Query 2914 CCGTCTGTTCCATTTAGGGAAGACCAAAGGATTATGCAGCAAGCTATGGAAGATGACGAT 2973 ||| |||||| || |||||||| | ||| || |||||||| ||||| | || | Sbjct 120 CCGGGTGTTCCTTTCCATGAAGACCAGAAGATGATTCAGCAAGCCATGGAGCAAGATTAC 179 Query 2974 AGTAGGGATGCTGATACGTATCTTTG--CTTAGTTTGGTCGCAAGATA-ACTTAGAAGAA 3030 | | || ||||||||||| ||| | |||| ||||| ||||||| | |||| | || Sbjct 180 AAGCGAGACGCTGATACGTA-CTTAGGACTTA-TTTGGGCGCAAGACAGTCTTA-ATGAG 236 Query 3031 GTGTTTAAACCAGAAACGTGGGCAAAGAGTAACCCGCTTTTAGATTTG---GAACAAGAG 3087 ||| || || ||||| |||| |||||||| || || || || ||| || ||| Sbjct 237 ACGTTCAAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCAA--- 293 Query 3088 CGTGAGAA--CCTCATGAAAGGGTTAATGGACAAGCGCGATAGCGACCTGCTAAGTGGTA 3145 ||||| | ||| |||| || |||||||||| ||||| ||| ||||| | Sbjct 294 --AGAGAAGTGTTAATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACA 351 Query 3146 ACATCGCTGATTTTCAAGTAAAAAATATGAACTGCTGGCTACTTG-CTGAT-AGCAACAG 3203 | || | || |||||| || || |||| ||||| | | | || || | || Sbjct 352 ATATTGGAGACTTTCAAAACAAGAACCTGAATATGTGGCTGCAAGAATCATCAG--ATAG 409 Query 3204 CTTTCTTG-ATTTAAAAGATATTGAGAATGCAGTCATCCCCGAGTTTGATAGACGTGGTA 3262 || |||| | || || |||||| ||| | || || ||||||| |||| Sbjct 410 -TTACTTGAAACTAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGTC 468 Query 3263 AACGTGTCTATGTTGGTCTTGACGCTTCAATGTTTAGCGATAATACGGCGATTGGCTTTG 3322 ||| ||| | ||| ||||| ||| ||||| |||||||| || ||| ||| |||| Sbjct 469 GTGATGTTTATATCGGTTTTGACTATTCGATGTTCAGCGATAACACTGCGCTTGCTTTTG 528 Query 3323 TTTATCCATATTTGGGCGAAGATGGCAGTCAGA---AGTGGCATGTAGAACAGCACAGCT 3379 ||| ||||||| |||||| || | || | ||| | | | || || | Sbjct 529 TTTTTCCATAT------GAAGATAGCGATGGGAAACACTGGTACATTGCTCAACATTCGT 582 Query 3380 TCATCCCTTGGCAACAAGCAGGTTCGTTGGAAGCCAAAATGGAGCAGGACGGTGTCAATT 3439 | || ||||||||| |||| || || | |||||||| |||| ||||| | | Sbjct 583 TTATTCCTTGGCAAAAAGCTGGATCAATTGAAGCCAAGGAAAAGCAAGACGGCATTGCCT 642 Query 3440 ATCGAGACTTGGAAGCCAAGGGCTTTTGTACGATTACAAGCCACCCACAAGGACTTATCA 3499 | ||||| ||| | | || ||||| || || || ||||| || ||||| |||||| Sbjct 643 ACCGAGAGCTGGCAAAAGAAGGTTTTTGCACAATCACTAGCCATCCGCAAGGGATTATCA 702 Query 3500 AT 3501 || Sbjct 703 AT 704 >seq219614 Length=1033 Score = 113 bits (124), Expect = 1e-20 Identities = 213/311 (68%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 2362 ATTTGTCCAAACGTAGACACTGGTGAGCCAACAAAGCTGATGGCATGGCAAAAGTTCATC 2421 ||||| || | || || || || ||||| || ||||| ||| | ||||| || || Sbjct 460 ATTTGCCCGGATGTCGATACCGGAGAGCCTACCAAGCTCATGCCTTGGCAGGCTTTTATA 401 Query 2422 TTATGTATGCTTTTCGGATGGAGAAATGCAAACGGTGGTAAACGTTTCAGCCGTGCGATT 2481 || | | ||| | || ||| | ||| | ||||||||||||| || || ||||| ||| Sbjct 400 TTGTCTCAACTTATAGGCTGGCGTAATCAAGACGGTGGTAAACGGTTTAGTCGTGCAATT 341 Query 2482 GTTTCAGTCGGTCGAGGTCAAGGGAAAACTTACTTAATGGCTATTCTGACAGCCTATTCG 2541 ||| || | || |||||||| || || ||| | ||| | || | | || || Sbjct 340 GTTAGTGTTGCACGTGGTCAAGGCAAGACGTACATGATGTCAATCATTGCGTGTTACTCA 281 Query 2542 TATTTTATTGAAAGCTTGGGGTTATCAAACCAAGATTATCTT-GTAACCTCAATCAACTT 2600 ||||| ||||| |||| || || |||||||||| |||| ||| | || || || | Sbjct 280 TATTTAGTTGAATCGCTGGGATTGTCTAACCAAGATT-TCTTAGTAGCATCGATTAATTA 222 Query 2601 CAAACAAACAAATAAGTTGCTTGGTTACATCAAATCAATGATGAAGCAGATAATTCAAAA 2660 ||| ||||| || | ||| ||||||||| ||||||||| |||| ||| || Sbjct 221 CAAGCAAACCGGGAAAATATATGGGTACATCAAAGGAATGATGAAAAAGATCATTGCTAA 162 Query 2661 CGAGCCTTTTA 2671 || ||||||| Sbjct 161 TGAACCTTTTA 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119083306083552