Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_000871.1
Length=37370
Score E
Sequences producing significant alignments: (Bits) Value
seq114485 149 1e-31
seq219614 113 1e-20
>seq114485
Length=730
Score = 149 bits (164), Expect = 1e-31
Identities = 439/662 (66%), Gaps = 31/662 (5%)
Strand=Plus/Plus
Query 2854 TCTGGGCAAGTAAAAGTACCCAATAGACAGTTTATCCAAATTTCTACGGCTTATCCCAAT 2913
|| || ||||| |||||| || | || ||| | || ||||| || |||||||||||
Sbjct 60 TCCGGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAAA 119
Query 2914 CCGTCTGTTCCATTTAGGGAAGACCAAAGGATTATGCAGCAAGCTATGGAAGATGACGAT 2973
||| |||||| || |||||||| | ||| || |||||||| ||||| | || |
Sbjct 120 CCGGGTGTTCCTTTCCATGAAGACCAGAAGATGATTCAGCAAGCCATGGAGCAAGATTAC 179
Query 2974 AGTAGGGATGCTGATACGTATCTTTG--CTTAGTTTGGTCGCAAGATA-ACTTAGAAGAA 3030
| | || ||||||||||| ||| | |||| ||||| ||||||| | |||| | ||
Sbjct 180 AAGCGAGACGCTGATACGTA-CTTAGGACTTA-TTTGGGCGCAAGACAGTCTTA-ATGAG 236
Query 3031 GTGTTTAAACCAGAAACGTGGGCAAAGAGTAACCCGCTTTTAGATTTG---GAACAAGAG 3087
||| || || ||||| |||| |||||||| || || || || ||| || |||
Sbjct 237 ACGTTCAAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCAA--- 293
Query 3088 CGTGAGAA--CCTCATGAAAGGGTTAATGGACAAGCGCGATAGCGACCTGCTAAGTGGTA 3145
||||| | ||| |||| || |||||||||| ||||| ||| ||||| |
Sbjct 294 --AGAGAAGTGTTAATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACA 351
Query 3146 ACATCGCTGATTTTCAAGTAAAAAATATGAACTGCTGGCTACTTG-CTGAT-AGCAACAG 3203
| || | || |||||| || || |||| ||||| | | | || || | ||
Sbjct 352 ATATTGGAGACTTTCAAAACAAGAACCTGAATATGTGGCTGCAAGAATCATCAG--ATAG 409
Query 3204 CTTTCTTG-ATTTAAAAGATATTGAGAATGCAGTCATCCCCGAGTTTGATAGACGTGGTA 3262
|| |||| | || || |||||| ||| | || || ||||||| ||||
Sbjct 410 -TTACTTGAAACTAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGTC 468
Query 3263 AACGTGTCTATGTTGGTCTTGACGCTTCAATGTTTAGCGATAATACGGCGATTGGCTTTG 3322
||| ||| | ||| ||||| ||| ||||| |||||||| || ||| ||| ||||
Sbjct 469 GTGATGTTTATATCGGTTTTGACTATTCGATGTTCAGCGATAACACTGCGCTTGCTTTTG 528
Query 3323 TTTATCCATATTTGGGCGAAGATGGCAGTCAGA---AGTGGCATGTAGAACAGCACAGCT 3379
||| ||||||| |||||| || | || | ||| | | | || || |
Sbjct 529 TTTTTCCATAT------GAAGATAGCGATGGGAAACACTGGTACATTGCTCAACATTCGT 582
Query 3380 TCATCCCTTGGCAACAAGCAGGTTCGTTGGAAGCCAAAATGGAGCAGGACGGTGTCAATT 3439
| || ||||||||| |||| || || | |||||||| |||| ||||| | |
Sbjct 583 TTATTCCTTGGCAAAAAGCTGGATCAATTGAAGCCAAGGAAAAGCAAGACGGCATTGCCT 642
Query 3440 ATCGAGACTTGGAAGCCAAGGGCTTTTGTACGATTACAAGCCACCCACAAGGACTTATCA 3499
| ||||| ||| | | || ||||| || || || ||||| || ||||| ||||||
Sbjct 643 ACCGAGAGCTGGCAAAAGAAGGTTTTTGCACAATCACTAGCCATCCGCAAGGGATTATCA 702
Query 3500 AT 3501
||
Sbjct 703 AT 704
>seq219614
Length=1033
Score = 113 bits (124), Expect = 1e-20
Identities = 213/311 (68%), Gaps = 2/311 (1%)
Strand=Plus/Minus
Query 2362 ATTTGTCCAAACGTAGACACTGGTGAGCCAACAAAGCTGATGGCATGGCAAAAGTTCATC 2421
||||| || | || || || || ||||| || ||||| ||| | ||||| || ||
Sbjct 460 ATTTGCCCGGATGTCGATACCGGAGAGCCTACCAAGCTCATGCCTTGGCAGGCTTTTATA 401
Query 2422 TTATGTATGCTTTTCGGATGGAGAAATGCAAACGGTGGTAAACGTTTCAGCCGTGCGATT 2481
|| | | ||| | || ||| | ||| | ||||||||||||| || || ||||| |||
Sbjct 400 TTGTCTCAACTTATAGGCTGGCGTAATCAAGACGGTGGTAAACGGTTTAGTCGTGCAATT 341
Query 2482 GTTTCAGTCGGTCGAGGTCAAGGGAAAACTTACTTAATGGCTATTCTGACAGCCTATTCG 2541
||| || | || |||||||| || || ||| | ||| | || | | || ||
Sbjct 340 GTTAGTGTTGCACGTGGTCAAGGCAAGACGTACATGATGTCAATCATTGCGTGTTACTCA 281
Query 2542 TATTTTATTGAAAGCTTGGGGTTATCAAACCAAGATTATCTT-GTAACCTCAATCAACTT 2600
||||| ||||| |||| || || |||||||||| |||| ||| | || || || |
Sbjct 280 TATTTAGTTGAATCGCTGGGATTGTCTAACCAAGATT-TCTTAGTAGCATCGATTAATTA 222
Query 2601 CAAACAAACAAATAAGTTGCTTGGTTACATCAAATCAATGATGAAGCAGATAATTCAAAA 2660
||| ||||| || | ||| ||||||||| ||||||||| |||| ||| ||
Sbjct 221 CAAGCAAACCGGGAAAATATATGGGTACATCAAAGGAATGATGAAAAAGATCATTGCTAA 162
Query 2661 CGAGCCTTTTA 2671
|| |||||||
Sbjct 161 TGAACCTTTTA 151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 119083306083552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |