Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_000872.1 Length=40739 Score E Sequences producing significant alignments: (Bits) Value seq114485 174 4e-39 seq219614 141 2e-29 seq57530 80.6 7e-11 >seq114485 Length=730 Score = 174 bits (192), Expect = 4e-39 Identities = 477/717 (67%), Gaps = 29/717 (4%) Strand=Plus/Plus Query 1239 GCTATTTTTGACGAAATGGGAGAAATAGAAACAAGGAATGCCGTATCTAAAATCGTTTCT 1298 ||||||||||| ||||| |||||| | |||| | || |||| |||||| | || Sbjct 3 GCTATTTTTGATGAAATCGGAGAAGTCGAAAGCCGCGATAAGATATCAAAAATCATATCC 62 Query 1299 GGACAGGTAAAAGTCCCAAACAGACAATTCATCCAAATTTCTACAGCTTACCCAAATCCG 1358 ||||| || ||||| ||| | ||||| | || ||||| |||||||| || || ||| Sbjct 63 GGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAAACCG 122 Query 1359 TCTGTTCCATTTAGGGAAGACCAAATGATTATGCAACAAGCGATGGAAGATGATGACAAT 1418 |||||| || |||||||| | ||| || || ||||| ||||| | ||| |||| Sbjct 123 GGTGTTCCTTTCCATGAAGACCAGAAGATGATTCAGCAAGCCATGGAGCAAGATTACAAG 182 Query 1419 AGGGAAGCTGATACATATCTTTG--TTTAGTGTGGTCACAGGATAACCTTGAAGAGGTAT 1476 | || |||||||| || ||| | ||| | ||| | || || | ||| | ||| | Sbjct 183 CGAGACGCTGATACGTA-CTTAGGACTTA-TTTGGGCGCAAGACAGTCTTAATGAGACGT 240 Query 1477 TTCAACCAGAAACATGGATGAAAAGTAATCCGCTTTTAGATTTG---GAAC-AAGAG-CG 1531 | | || ||||| ||| | || |||||||| || || || ||| || | ||||| | Sbjct 241 TCAAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCAAAGAGAAG 300 Query 1532 TGATAATCTCATGAAAGGGTTGTTGGATAAAAGGGATAGCGACCTTTTAAGTGGAAACCT 1591 || || ||| |||| ||| |||| || | ||||| ||| | || || | Sbjct 301 TGTTA-----ATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACAATAT 355 Query 1592 TTCCGACTTCCAAGTCAAGAATATGAACTGCTGGCTACTTG-CTGAT-AGTAATAGCTTT 1649 | ||||| ||| |||||| |||| ||||| | | | || || |||| || Sbjct 356 TGGAGACTTTCAAAACAAGAACCTGAATATGTGGCTGCAAGAATCATCAG--ATAG-TTA 412 Query 1650 CTTG-ACCTAAAAGACATAGAAAATGCAGTCATTGATGACTTTGACATAAAAGGTAAGCG 1708 |||| | ||| ||||| || ||| | ||| | ||||| || | ||| Sbjct 413 CTTGAAACTAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGTCGTGA 472 Query 1709 TGTATATGTCGGACTAGATGCTTCGATGTTTAGCGATAACACAGCTCTTGGTTTCGTATA 1768 ||| ||| |||| | || ||||||||| ||||||||||| || |||| ||| || | Sbjct 473 TGTTTATATCGGTTTTGACTATTCGATGTTCAGCGATAACACTGCGCTTGCTTTTGTTTT 532 Query 1769 TCCCTACTTGGGTGAAGA---CGGTAGCCAAAAATGGCATATTGAACAACACAGTTTCAT 1825 ||| || |||||| || | | || | ||| | |||| ||||| || || Sbjct 533 TCCATA------TGAAGATAGCGATGGGAAACACTGGTACATTGCTCAACATTCGTTTAT 586 Query 1826 CCCGTGGCAACAGGCAGGGTCAATAGAAGCCAAAATTGAACAGGACGGTATCAACTACCG 1885 || |||||| | || || ||||| |||||||| | || ||||| || |||||| Sbjct 587 TCCTTGGCAAAAAGCTGGATCAATTGAAGCCAAGGAAAAGCAAGACGGCATTGCCTACCG 646 Query 1886 AGATTTAGAAACCAAGGGATTTTGTACAATTACAAGCCACCCACAAGGACTTATCAA 1942 ||| | | || | || ||||| ||||| || ||||| || ||||| ||||||| Sbjct 647 AGAGCTGGCAAAAGAAGGTTTTTGCACAATCACTAGCCATCCGCAAGGGATTATCAA 703 >seq219614 Length=1033 Score = 141 bits (156), Expect = 2e-29 Identities = 207/293 (71%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 804 ATATGCCCAAACGTAGACACTGGAGAACCTACACAACTGATGCCGTGGCAGAAATTCATT 863 || ||||| | || || || ||||| ||||| | || ||||| |||||| || || Sbjct 460 ATTTGCCCGGATGTCGATACCGGAGAGCCTACCAAGCTCATGCCTTGGCAGGCTTTTATA 401 Query 864 CTTTGTATGCTTTTCGGATGGAGAAATGCTAACGGTGGTAAACGCTTTAGTCGTGCTATT 923 | | | ||| | || ||| | ||| ||||||||||||| ||||||||||| ||| Sbjct 400 TTGTCTCAACTTATAGGCTGGCGTAATCAAGACGGTGGTAAACGGTTTAGTCGTGCAATT 341 Query 924 GTTTCGGTTGGTCGTGGTCAAGGTAAAACGTATTTGATGGCTATTCTTACGGCGTATTCA 983 ||| |||| ||||||||||| || ||||| ||||| | || || || || ||| Sbjct 340 GTTAGTGTTGCACGTGGTCAAGGCAAGACGTACATGATGTCAATCATTGCGTGTTACTCA 281 Query 984 TACTTTATTGAAAGTTTCGGATTATCAAACCAAGATTATCTGGTAACATCTATCAAATTC 1043 || || ||||| | ||||| || |||||||||| | ||| |||| || || | | Sbjct 280 TATTTAGTTGAATCGCTGGGATTGTCTAACCAAGATTTCTTAGTAGCATCGATTAATTAC 221 Query 1044 AAGCAAACAAACAAGTTGCTTGGGTACATCAAATCAATGATGAAGCAGATAAT 1096 |||||||| || | ||||||||||||| ||||||||| |||| || Sbjct 220 AAGCAAACCGGGAAAATATATGGGTACATCAAAGGAATGATGAAAAAGATCAT 168 >seq57530 Length=397 Score = 80.6 bits (88), Expect = 7e-11 Identities = 122/171 (71%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 5444 ACATTGTTTGACCGTCAACACTTGTCACTTCTATCT-ACTAATATTGGTGGTGGAGCATT 5502 ||| |||||||||||||||| || ||| | | || || ||||||| ||| || || Sbjct 276 ACACTGTTTGACCGTCAACAGATGAG-CTTGGTTGTCACCAACATTGGTGCTGGTGCGTT 218 Query 5503 TGAAACAGATACTACTAAAGTACGTGTTATTGACCGCTTTGATGTTGTATCAACTGACAC 5562 ||| ||| ||||| | ||||| || |||||||| ||||| | ||||||| | Sbjct 217 TGAGCATGATCAGACTAAGCTGCGTGTCATCGACCGCTTCGATGTGCAAGCAACTGATGC 158 Query 5563 AGAAGCGTTTGTGCCAGCGTCATTCAAAGCAATTGCTGATCAAAAAGCAAA 5613 || || |||||| | | || ||| ||||||||||| || ||||||| Sbjct 157 TGATGCCTTTGTGGCTGGATCGTTCTCCGCAATTGCTGACCAGCAAGCAAA 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129829895020536