Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_000872.1
Length=40739
Score E
Sequences producing significant alignments: (Bits) Value
seq114485 174 4e-39
seq219614 141 2e-29
seq57530 80.6 7e-11
>seq114485
Length=730
Score = 174 bits (192), Expect = 4e-39
Identities = 477/717 (67%), Gaps = 29/717 (4%)
Strand=Plus/Plus
Query 1239 GCTATTTTTGACGAAATGGGAGAAATAGAAACAAGGAATGCCGTATCTAAAATCGTTTCT 1298
||||||||||| ||||| |||||| | |||| | || |||| |||||| | ||
Sbjct 3 GCTATTTTTGATGAAATCGGAGAAGTCGAAAGCCGCGATAAGATATCAAAAATCATATCC 62
Query 1299 GGACAGGTAAAAGTCCCAAACAGACAATTCATCCAAATTTCTACAGCTTACCCAAATCCG 1358
||||| || ||||| ||| | ||||| | || ||||| |||||||| || || |||
Sbjct 63 GGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAAACCG 122
Query 1359 TCTGTTCCATTTAGGGAAGACCAAATGATTATGCAACAAGCGATGGAAGATGATGACAAT 1418
|||||| || |||||||| | ||| || || ||||| ||||| | ||| ||||
Sbjct 123 GGTGTTCCTTTCCATGAAGACCAGAAGATGATTCAGCAAGCCATGGAGCAAGATTACAAG 182
Query 1419 AGGGAAGCTGATACATATCTTTG--TTTAGTGTGGTCACAGGATAACCTTGAAGAGGTAT 1476
| || |||||||| || ||| | ||| | ||| | || || | ||| | ||| |
Sbjct 183 CGAGACGCTGATACGTA-CTTAGGACTTA-TTTGGGCGCAAGACAGTCTTAATGAGACGT 240
Query 1477 TTCAACCAGAAACATGGATGAAAAGTAATCCGCTTTTAGATTTG---GAAC-AAGAG-CG 1531
| | || ||||| ||| | || |||||||| || || || ||| || | ||||| |
Sbjct 241 TCAAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCAAAGAGAAG 300
Query 1532 TGATAATCTCATGAAAGGGTTGTTGGATAAAAGGGATAGCGACCTTTTAAGTGGAAACCT 1591
|| || ||| |||| ||| |||| || | ||||| ||| | || || |
Sbjct 301 TGTTA-----ATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACAATAT 355
Query 1592 TTCCGACTTCCAAGTCAAGAATATGAACTGCTGGCTACTTG-CTGAT-AGTAATAGCTTT 1649
| ||||| ||| |||||| |||| ||||| | | | || || |||| ||
Sbjct 356 TGGAGACTTTCAAAACAAGAACCTGAATATGTGGCTGCAAGAATCATCAG--ATAG-TTA 412
Query 1650 CTTG-ACCTAAAAGACATAGAAAATGCAGTCATTGATGACTTTGACATAAAAGGTAAGCG 1708
|||| | ||| ||||| || ||| | ||| | ||||| || | |||
Sbjct 413 CTTGAAACTAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGTCGTGA 472
Query 1709 TGTATATGTCGGACTAGATGCTTCGATGTTTAGCGATAACACAGCTCTTGGTTTCGTATA 1768
||| ||| |||| | || ||||||||| ||||||||||| || |||| ||| || |
Sbjct 473 TGTTTATATCGGTTTTGACTATTCGATGTTCAGCGATAACACTGCGCTTGCTTTTGTTTT 532
Query 1769 TCCCTACTTGGGTGAAGA---CGGTAGCCAAAAATGGCATATTGAACAACACAGTTTCAT 1825
||| || |||||| || | | || | ||| | |||| ||||| || ||
Sbjct 533 TCCATA------TGAAGATAGCGATGGGAAACACTGGTACATTGCTCAACATTCGTTTAT 586
Query 1826 CCCGTGGCAACAGGCAGGGTCAATAGAAGCCAAAATTGAACAGGACGGTATCAACTACCG 1885
|| |||||| | || || ||||| |||||||| | || ||||| || ||||||
Sbjct 587 TCCTTGGCAAAAAGCTGGATCAATTGAAGCCAAGGAAAAGCAAGACGGCATTGCCTACCG 646
Query 1886 AGATTTAGAAACCAAGGGATTTTGTACAATTACAAGCCACCCACAAGGACTTATCAA 1942
||| | | || | || ||||| ||||| || ||||| || ||||| |||||||
Sbjct 647 AGAGCTGGCAAAAGAAGGTTTTTGCACAATCACTAGCCATCCGCAAGGGATTATCAA 703
>seq219614
Length=1033
Score = 141 bits (156), Expect = 2e-29
Identities = 207/293 (71%), Gaps = 0/293 (0%)
Strand=Plus/Minus
Query 804 ATATGCCCAAACGTAGACACTGGAGAACCTACACAACTGATGCCGTGGCAGAAATTCATT 863
|| ||||| | || || || ||||| ||||| | || ||||| |||||| || ||
Sbjct 460 ATTTGCCCGGATGTCGATACCGGAGAGCCTACCAAGCTCATGCCTTGGCAGGCTTTTATA 401
Query 864 CTTTGTATGCTTTTCGGATGGAGAAATGCTAACGGTGGTAAACGCTTTAGTCGTGCTATT 923
| | | ||| | || ||| | ||| ||||||||||||| ||||||||||| |||
Sbjct 400 TTGTCTCAACTTATAGGCTGGCGTAATCAAGACGGTGGTAAACGGTTTAGTCGTGCAATT 341
Query 924 GTTTCGGTTGGTCGTGGTCAAGGTAAAACGTATTTGATGGCTATTCTTACGGCGTATTCA 983
||| |||| ||||||||||| || ||||| ||||| | || || || || |||
Sbjct 340 GTTAGTGTTGCACGTGGTCAAGGCAAGACGTACATGATGTCAATCATTGCGTGTTACTCA 281
Query 984 TACTTTATTGAAAGTTTCGGATTATCAAACCAAGATTATCTGGTAACATCTATCAAATTC 1043
|| || ||||| | ||||| || |||||||||| | ||| |||| || || | |
Sbjct 280 TATTTAGTTGAATCGCTGGGATTGTCTAACCAAGATTTCTTAGTAGCATCGATTAATTAC 221
Query 1044 AAGCAAACAAACAAGTTGCTTGGGTACATCAAATCAATGATGAAGCAGATAAT 1096
|||||||| || | ||||||||||||| ||||||||| |||| ||
Sbjct 220 AAGCAAACCGGGAAAATATATGGGTACATCAAAGGAATGATGAAAAAGATCAT 168
>seq57530
Length=397
Score = 80.6 bits (88), Expect = 7e-11
Identities = 122/171 (71%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 5444 ACATTGTTTGACCGTCAACACTTGTCACTTCTATCT-ACTAATATTGGTGGTGGAGCATT 5502
||| |||||||||||||||| || ||| | | || || ||||||| ||| || ||
Sbjct 276 ACACTGTTTGACCGTCAACAGATGAG-CTTGGTTGTCACCAACATTGGTGCTGGTGCGTT 218
Query 5503 TGAAACAGATACTACTAAAGTACGTGTTATTGACCGCTTTGATGTTGTATCAACTGACAC 5562
||| ||| ||||| | ||||| || |||||||| ||||| | ||||||| |
Sbjct 217 TGAGCATGATCAGACTAAGCTGCGTGTCATCGACCGCTTCGATGTGCAAGCAACTGATGC 158
Query 5563 AGAAGCGTTTGTGCCAGCGTCATTCAAAGCAATTGCTGATCAAAAAGCAAA 5613
|| || |||||| | | || ||| ||||||||||| || |||||||
Sbjct 157 TGATGCCTTTGTGGCTGGATCGTTCTCCGCAATTGCTGACCAGCAAGCAAA 107
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 129829895020536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |