Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_000896.1
Length=43785
Score E
Sequences producing significant alignments: (Bits) Value
seq114485 286 1e-72
seq219614 127 6e-25
seq99429 82.4 2e-11
>seq114485
Length=730
Score = 286 bits (316), Expect = 1e-72
Identities = 506/730 (69%), Gaps = 21/730 (3%)
Strand=Plus/Plus
Query 20871 CAGCCATTTTTGATGAGATTGGAGAAGTTAAAT--CACGAGAAACTGTGAGCAAAATTAT 20928
|||| ||||||||||| || |||||||| || | ||| || | | | ||||| ||
Sbjct 1 CAGCTATTTTTGATGAAATCGGAGAAGTCGAAAGCCGCGATAAGATATCA--AAAATCAT 58
Query 20929 TTCTGGTCAAGTTAAAGTTTCTAACCACCAGTTTATACAAATTTCTACGTCTTATCCTGA 20988
|| || ||||| ||||| |||| || ||| | || ||||| || ||||||| |
Sbjct 59 ATCCGGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAA 118
Query 20989 TCCAACAGTTCCATTTCACGAAGACCAAAAAATGATTATTCAAGCGATGGAACAAGATTG 21048
|| ||||| || || |||||||| || |||||| ||||| ||||| |||||||
Sbjct 119 ACCGGGTGTTCCTTTCCATGAAGACCAGAAGATGATTCAGCAAGCCATGGAGCAAGATTA 178
Query 21049 GAAAAGGGATGCTGACAGCTATCTAGGATTGATTTGGTCGCAAGATAGTTTAGATGAAAC 21108
|| | || ||||| | || ||||| | |||||| ||||||| ||| | |||| ||
Sbjct 179 CAAGCGAGACGCTGATACGTACTTAGGACTTATTTGGGCGCAAGACAGTCTTAATGAGAC 238
Query 21109 TTACAAGCCAGAAACTTGGGTTAAGTCAAATCCACTCTTAGATTTACCCGATCAACGTGA 21168
| |||||| ||||||||||||||| |||||||| || || || || |||||| | ||
Sbjct 239 GTTCAAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCAAAGAGA 298
Query 21169 TAATTTACTAAAAGGTTTAACAGATAAGCGAGATAGTGACTTGCTCACTGGTAATATTTC 21228
||| | |||| || || ||||| ||||||||| |||| | ||||||
Sbjct 299 AGTGTTAATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACAATATTGG 358
Query 21229 GGATTTTCAAACTAAGAATTTAAATCTTTGGCTTAAACAATCAACTGACAGCTATCTTAA 21288
|| ||||||| ||||| | ||| | ||||| || ||||| | || || || | ||
Sbjct 359 AGACTTTCAAAACAAGAACCTGAATATGTGGCTGCAAGAATCATCAGATAGTTACTTGAA 418
Query 21289 TTTAAAAGACGTTGAAGATGCTGTATATAATGATTTTAATATTGATGGTCATGAAGTATT 21348
|| ||| |||| || | | | |||| |||||||||||| ||| || |
Sbjct 419 ACTAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGTCGTGATGTTTA 478
Query 21349 TATTGGATTTGATTATTCAATGTTTTCTGATAATACAGCTCTTAGTTTCGTTTATCCTTA 21408
||| || ||||| ||||| ||||| ||||| || || ||| ||| |||| ||| ||
Sbjct 479 TATCGGTTTTGACTATTCGATGTTCAGCGATAACACTGCGCTTGCTTTTGTTTTTCCATA 538
Query 21409 TGA------TGATGGGAAA---TTCCATATTGAGCAGCATAGTTTTATTCCGTTTCAACA 21459
||| ||||||||| | | |||| || ||| |||||||| | ||| |
Sbjct 539 TGAAGATAGCGATGGGAAACACTGGTACATTGCTCAACATTCGTTTATTCCTTGGCAAAA 598
Query 21460 AGCTGGATCAATTGAAGCTAAGGAAAAACAAGATGGAATTACATATCG-TAACTACC--C 21516
|||||||||||||||||| |||||||| ||||| || ||| | || || | || |
Sbjct 599 AGCTGGATCAATTGAAGCCAAGGAAAAGCAAGACGGCATTGCCTACCGAGAGCTGGCAAA 658
Query 21517 TGAA---TACTGCACAATTAC-AGCACATCCACAGGGGATTATTAATCCGGAACAAATTT 21572
||| | |||||||| || ||| ||||| || |||||||| ||| || || | |
Sbjct 659 AGAAGGTTTTTGCACAATCACTAGC-CATCCGCAAGGGATTATCAATGATGATCAGGTGT 717
Query 21573 ATAAATGGCT 21582
||| ||||||
Sbjct 718 ATACATGGCT 727
>seq219614
Length=1033
Score = 127 bits (140), Expect = 6e-25
Identities = 214/310 (69%), Gaps = 0/310 (0%)
Strand=Plus/Minus
Query 20438 ATTTGTCCTAATGTTGATACGGGAGAGCCAACAAAACTTATGGAGTGGCAAGAATTTACT 20497
||||| || |||| ||||| |||||||| || || || ||| ||||| | ||||
Sbjct 460 ATTTGCCCGGATGTCGATACCGGAGAGCCTACCAAGCTCATGCCTTGGCAGGCTTTTATA 401
Query 20498 TTTGCTCTTATGTTTGGCTGGCGTGATAAAGATAACAACAAACGCTTTACTCGTGTGATT 20557
|| ||| | | ||||||||| || |||| ||||| |||| ||||| |||
Sbjct 400 TTGTCTCAACTTATAGGCTGGCGTAATCAAGACGGTGGTAAACGGTTTAGTCGTGCAATT 341
Query 20558 GATTCTGTTGCTCGTGGTCAAGGTAAGACCTATCAAATGGCTATCTTAGTTTGTTACTCA 20617
| | |||||| ||||||||||| ||||| || ||| | ||| | | |||||||||
Sbjct 340 GTTAGTGTTGCACGTGGTCAAGGCAAGACGTACATGATGTCAATCATTGCGTGTTACTCA 281
Query 20618 TTTTTAATTGAAAGCGTGGGACTATCGAATCAAGATTATCTAGTTGCTTCAATCAACTTT 20677
| |||| ||||| ||||| | || || ||||||| |||| || || || || |
Sbjct 280 TATTTAGTTGAATCGCTGGGATTGTCTAACCAAGATTTCTTAGTAGCATCGATTAATTAC 221
Query 20678 AAACAGACCATGAAATTATTTGGTTATGTTGCATCAATGATGAGAAAGATTATTCAGATT 20737
|| || ||| |||| ||| ||| || | | |||||||| |||||| ||| | |
Sbjct 220 AAGCAAACCGGGAAAATATATGGGTACATCAAAGGAATGATGAAAAAGATCATTGCTAAT 161
Query 20738 GAGCCATTTA 20747
|| || ||||
Sbjct 160 GAACCTTTTA 151
>seq99429
Length=368
Score = 82.4 bits (90), Expect = 2e-11
Identities = 217/323 (67%), Gaps = 10/323 (3%)
Strand=Plus/Minus
Query 12084 GGTTATATTGATTTAACCAATGGTACACTTCACAACCACAAATACAATAAGATGTTTACT 12143
|| ||||||||| || | |||| || |||||| | || | ||| || ||||| ||
Sbjct 355 GGATATATTGATCTATCTGATGGAACTCTTCACGAGCATGACATCAAGAAAATGTT--CT 298
Query 12144 C-AAGAAA-CAGGAGTAGATTTTTCTGAGAATGTAGATTGCCCTTTATGGATTAAG--TT 12199
| |||||| || || || | ||| || | ||| || || ||| |||| ||| ||
Sbjct 297 CGAAGAAATCAAACGTTGAATATTCAGACACTGTTGAGTGTCCTGAATGGC--AAGCTTT 240
Query 12200 CTTAAATCAAACATTTCAAAAT-GACCAAGAATTAATACACTTCGTTCAAAAAATCATAG 12258
|| ||||| || |||||| ||| | |||||||| ||| | |||||||| | |
Sbjct 239 TTTGAATCAGAC-TTTCAATGGAGACAACGAATTAATTGACTACATTCAAAAAGCGGTCG 181
Query 12259 GCTACTCTTTGACAGGCTCAAATGCTGAACAAAAAATGTTTATCCTTTATGGAAATGGTC 12318
| || || || ||||| ||| || || || |||||||||||||| ||| || |
Sbjct 180 GGTATTCATTAACAGGTTCAGTTGAAGAGCAGGTCATGTTTATCCTTTACGGATCAGGGC 121
Query 12319 GTAATGGTAAATCAGTATTACTGAATATAGTTAAATACATCTTTGGATCTTATGCCAAAA 12378
| || |||||||| || || || ||| | || |||| ||| |||| | |
Sbjct 120 GAAACGGTAAATCTGTTTTCATGGATACTCTCAAGCACATAGCCGGAAGTTATTCACGCA 61
Query 12379 CGATGAATGCTACTACAATTATG 12401
||||| | |||| ||||||||
Sbjct 60 CGATGCAGGCTAAATCAATTATG 38
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139546163913992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |