Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_000896.1 Length=43785 Score E Sequences producing significant alignments: (Bits) Value seq114485 286 1e-72 seq219614 127 6e-25 seq99429 82.4 2e-11 >seq114485 Length=730 Score = 286 bits (316), Expect = 1e-72 Identities = 506/730 (69%), Gaps = 21/730 (3%) Strand=Plus/Plus Query 20871 CAGCCATTTTTGATGAGATTGGAGAAGTTAAAT--CACGAGAAACTGTGAGCAAAATTAT 20928 |||| ||||||||||| || |||||||| || | ||| || | | | ||||| || Sbjct 1 CAGCTATTTTTGATGAAATCGGAGAAGTCGAAAGCCGCGATAAGATATCA--AAAATCAT 58 Query 20929 TTCTGGTCAAGTTAAAGTTTCTAACCACCAGTTTATACAAATTTCTACGTCTTATCCTGA 20988 || || ||||| ||||| |||| || ||| | || ||||| || ||||||| | Sbjct 59 ATCCGGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAA 118 Query 20989 TCCAACAGTTCCATTTCACGAAGACCAAAAAATGATTATTCAAGCGATGGAACAAGATTG 21048 || ||||| || || |||||||| || |||||| ||||| ||||| ||||||| Sbjct 119 ACCGGGTGTTCCTTTCCATGAAGACCAGAAGATGATTCAGCAAGCCATGGAGCAAGATTA 178 Query 21049 GAAAAGGGATGCTGACAGCTATCTAGGATTGATTTGGTCGCAAGATAGTTTAGATGAAAC 21108 || | || ||||| | || ||||| | |||||| ||||||| ||| | |||| || Sbjct 179 CAAGCGAGACGCTGATACGTACTTAGGACTTATTTGGGCGCAAGACAGTCTTAATGAGAC 238 Query 21109 TTACAAGCCAGAAACTTGGGTTAAGTCAAATCCACTCTTAGATTTACCCGATCAACGTGA 21168 | |||||| ||||||||||||||| |||||||| || || || || |||||| | || Sbjct 239 GTTCAAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCAAAGAGA 298 Query 21169 TAATTTACTAAAAGGTTTAACAGATAAGCGAGATAGTGACTTGCTCACTGGTAATATTTC 21228 ||| | |||| || || ||||| ||||||||| |||| | |||||| Sbjct 299 AGTGTTAATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACAATATTGG 358 Query 21229 GGATTTTCAAACTAAGAATTTAAATCTTTGGCTTAAACAATCAACTGACAGCTATCTTAA 21288 || ||||||| ||||| | ||| | ||||| || ||||| | || || || | || Sbjct 359 AGACTTTCAAAACAAGAACCTGAATATGTGGCTGCAAGAATCATCAGATAGTTACTTGAA 418 Query 21289 TTTAAAAGACGTTGAAGATGCTGTATATAATGATTTTAATATTGATGGTCATGAAGTATT 21348 || ||| |||| || | | | |||| |||||||||||| ||| || | Sbjct 419 ACTAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGTCGTGATGTTTA 478 Query 21349 TATTGGATTTGATTATTCAATGTTTTCTGATAATACAGCTCTTAGTTTCGTTTATCCTTA 21408 ||| || ||||| ||||| ||||| ||||| || || ||| ||| |||| ||| || Sbjct 479 TATCGGTTTTGACTATTCGATGTTCAGCGATAACACTGCGCTTGCTTTTGTTTTTCCATA 538 Query 21409 TGA------TGATGGGAAA---TTCCATATTGAGCAGCATAGTTTTATTCCGTTTCAACA 21459 ||| ||||||||| | | |||| || ||| |||||||| | ||| | Sbjct 539 TGAAGATAGCGATGGGAAACACTGGTACATTGCTCAACATTCGTTTATTCCTTGGCAAAA 598 Query 21460 AGCTGGATCAATTGAAGCTAAGGAAAAACAAGATGGAATTACATATCG-TAACTACC--C 21516 |||||||||||||||||| |||||||| ||||| || ||| | || || | || | Sbjct 599 AGCTGGATCAATTGAAGCCAAGGAAAAGCAAGACGGCATTGCCTACCGAGAGCTGGCAAA 658 Query 21517 TGAA---TACTGCACAATTAC-AGCACATCCACAGGGGATTATTAATCCGGAACAAATTT 21572 ||| | |||||||| || ||| ||||| || |||||||| ||| || || | | Sbjct 659 AGAAGGTTTTTGCACAATCACTAGC-CATCCGCAAGGGATTATCAATGATGATCAGGTGT 717 Query 21573 ATAAATGGCT 21582 ||| |||||| Sbjct 718 ATACATGGCT 727 >seq219614 Length=1033 Score = 127 bits (140), Expect = 6e-25 Identities = 214/310 (69%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 20438 ATTTGTCCTAATGTTGATACGGGAGAGCCAACAAAACTTATGGAGTGGCAAGAATTTACT 20497 ||||| || |||| ||||| |||||||| || || || ||| ||||| | |||| Sbjct 460 ATTTGCCCGGATGTCGATACCGGAGAGCCTACCAAGCTCATGCCTTGGCAGGCTTTTATA 401 Query 20498 TTTGCTCTTATGTTTGGCTGGCGTGATAAAGATAACAACAAACGCTTTACTCGTGTGATT 20557 || ||| | | ||||||||| || |||| ||||| |||| ||||| ||| Sbjct 400 TTGTCTCAACTTATAGGCTGGCGTAATCAAGACGGTGGTAAACGGTTTAGTCGTGCAATT 341 Query 20558 GATTCTGTTGCTCGTGGTCAAGGTAAGACCTATCAAATGGCTATCTTAGTTTGTTACTCA 20617 | | |||||| ||||||||||| ||||| || ||| | ||| | | ||||||||| Sbjct 340 GTTAGTGTTGCACGTGGTCAAGGCAAGACGTACATGATGTCAATCATTGCGTGTTACTCA 281 Query 20618 TTTTTAATTGAAAGCGTGGGACTATCGAATCAAGATTATCTAGTTGCTTCAATCAACTTT 20677 | |||| ||||| ||||| | || || ||||||| |||| || || || || | Sbjct 280 TATTTAGTTGAATCGCTGGGATTGTCTAACCAAGATTTCTTAGTAGCATCGATTAATTAC 221 Query 20678 AAACAGACCATGAAATTATTTGGTTATGTTGCATCAATGATGAGAAAGATTATTCAGATT 20737 || || ||| |||| ||| ||| || | | |||||||| |||||| ||| | | Sbjct 220 AAGCAAACCGGGAAAATATATGGGTACATCAAAGGAATGATGAAAAAGATCATTGCTAAT 161 Query 20738 GAGCCATTTA 20747 || || |||| Sbjct 160 GAACCTTTTA 151 >seq99429 Length=368 Score = 82.4 bits (90), Expect = 2e-11 Identities = 217/323 (67%), Gaps = 10/323 (3%) Strand=Plus/Minus Query 12084 GGTTATATTGATTTAACCAATGGTACACTTCACAACCACAAATACAATAAGATGTTTACT 12143 || ||||||||| || | |||| || |||||| | || | ||| || ||||| || Sbjct 355 GGATATATTGATCTATCTGATGGAACTCTTCACGAGCATGACATCAAGAAAATGTT--CT 298 Query 12144 C-AAGAAA-CAGGAGTAGATTTTTCTGAGAATGTAGATTGCCCTTTATGGATTAAG--TT 12199 | |||||| || || || | ||| || | ||| || || ||| |||| ||| || Sbjct 297 CGAAGAAATCAAACGTTGAATATTCAGACACTGTTGAGTGTCCTGAATGGC--AAGCTTT 240 Query 12200 CTTAAATCAAACATTTCAAAAT-GACCAAGAATTAATACACTTCGTTCAAAAAATCATAG 12258 || ||||| || |||||| ||| | |||||||| ||| | |||||||| | | Sbjct 239 TTTGAATCAGAC-TTTCAATGGAGACAACGAATTAATTGACTACATTCAAAAAGCGGTCG 181 Query 12259 GCTACTCTTTGACAGGCTCAAATGCTGAACAAAAAATGTTTATCCTTTATGGAAATGGTC 12318 | || || || ||||| ||| || || || |||||||||||||| ||| || | Sbjct 180 GGTATTCATTAACAGGTTCAGTTGAAGAGCAGGTCATGTTTATCCTTTACGGATCAGGGC 121 Query 12319 GTAATGGTAAATCAGTATTACTGAATATAGTTAAATACATCTTTGGATCTTATGCCAAAA 12378 | || |||||||| || || || ||| | || |||| ||| |||| | | Sbjct 120 GAAACGGTAAATCTGTTTTCATGGATACTCTCAAGCACATAGCCGGAAGTTATTCACGCA 61 Query 12379 CGATGAATGCTACTACAATTATG 12401 ||||| | |||| |||||||| Sbjct 60 CGATGCAGGCTAAATCAATTATG 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139546163913992