Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq27195 149 6e-31 >seq27195 Length=13093 Score = 149 bits (164), Expect = 6e-31 Identities = 558/854 (65%), Gaps = 27/854 (3%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 |||||||| | ||| | || || |||||||||||||| || | || || || |||| Sbjct 9519 TGGTAATCACCAACTCTCTTCTCAAAAAAGTTAGTTTTCCCTTGAAGCGAGATTAACTCC 9460 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || ||||||| |||||||| | | | ||| ||||| || | | | | Sbjct 9459 ATCCAATCAAACGGATTAGTCACACCGTACACCTTACCATACCCAAGCGCACCCAAAAGC 9400 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 |||||||| ||||| || ||||| | | ||| ||||| | ||||| |||| | ||| Sbjct 9399 CTATCCGCAACAAACTCAATATACTCACTCATCAATTCACGATTCATCCCTACCA-ACGC 9341 Query 16856 AC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT--A 16912 | |||||| || || || ||| | ||| || | || || || | ||| | Sbjct 9340 GCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCCACAGCGTCGCACACAATCGA 9281 Query 16913 CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAA 16972 || ||||| ||||| | | | | | ||| || | | ||||| || |||||| Sbjct 9280 CTTC--ACTCGCTCCTCCGTCAGCTTCGTTCGGAGAAGTGTGTAGATCAGGCAAGCGAAA 9223 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 ||||| ||||| || ||||||| ||| | ||||| || || || ||||| ||||| Sbjct 9222 TCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCAGGCATG 9163 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 |||||||| || | ||| || |||| ||| || || ||||| ||||| ||| Sbjct 9162 AGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATACCTTCG 9103 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTC-GCG-TCTTTGTTACGAATCCATT 17150 ||| | || || |||| | |||||| ||| | ||| | | || | || |||||| Sbjct 9102 ACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCCAT----CG-ATCCATG 9048 Query 17151 TCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CTTAA---AT 17206 || |||| | ||||| | | |||| || ||||| || || | || || Sbjct 9047 TCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAGAGAT 8988 Query 17207 AATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 || ||||| || ||| || | || || ||||| | || || || ||||| || Sbjct 8987 GATCTCTCTCTT---TGT-TATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTCA 8932 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTG 17325 || || || ||||| || || ||||| |||||||| |||||| || ||||| | | ||| Sbjct 8931 GAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCTTCAGAGACTTG 8873 Query 17326 AACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGA 17384 || || || | |||||| || ||||| || ||||| ||||| ||||||| Sbjct 8872 TACATCTGACAT-GAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGA 8814 Query 17385 AAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAGAACGCGCCAGTCC 17443 | || || | | || || ||||| | ||| |||| | | ||| |||||| Sbjct 8813 AGAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCTCCCAGTCA 8755 Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503 | |||| |||| ||| |||||||||| |||||| || || | || || || Sbjct 8754 CGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTG 8695 Query 17504 TACATATTCCAAAT 17517 ||||| | ||| || Sbjct 8694 TACATCTCCCAGAT 8681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515816816555040