Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq27195 149 6e-31
>seq27195
Length=13093
Score = 149 bits (164), Expect = 6e-31
Identities = 558/854 (65%), Gaps = 27/854 (3%)
Strand=Plus/Minus
Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735
|||||||| | ||| | || || |||||||||||||| || | || || || ||||
Sbjct 9519 TGGTAATCACCAACTCTCTTCTCAAAAAAGTTAGTTTTCCCTTGAAGCGAGATTAACTCC 9460
Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795
|| ||||||| |||||||| | | | ||| ||||| || | | | |
Sbjct 9459 ATCCAATCAAACGGATTAGTCACACCGTACACCTTACCATACCCAAGCGCACCCAAAAGC 9400
Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855
|||||||| ||||| || ||||| | | ||| ||||| | ||||| |||| | |||
Sbjct 9399 CTATCCGCAACAAACTCAATATACTCACTCATCAATTCACGATTCATCCCTACCA-ACGC 9341
Query 16856 AC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT--A 16912
| |||||| || || || ||| | ||| || | || || || | ||| |
Sbjct 9340 GCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCCACAGCGTCGCACACAATCGA 9281
Query 16913 CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAA 16972
|| ||||| ||||| | | | | | ||| || | | ||||| || ||||||
Sbjct 9280 CTTC--ACTCGCTCCTCCGTCAGCTTCGTTCGGAGAAGTGTGTAGATCAGGCAAGCGAAA 9223
Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032
||||| ||||| || ||||||| ||| | ||||| || || || ||||| |||||
Sbjct 9222 TCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCAGGCATG 9163
Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092
|||||||| || | ||| || |||| ||| || || ||||| ||||| |||
Sbjct 9162 AGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATACCTTCG 9103
Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTC-GCG-TCTTTGTTACGAATCCATT 17150
||| | || || |||| | |||||| ||| | ||| | | || | || ||||||
Sbjct 9102 ACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCCAT----CG-ATCCATG 9048
Query 17151 TCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CTTAA---AT 17206
|| |||| | ||||| | | |||| || ||||| || || | || ||
Sbjct 9047 TCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAGAGAT 8988
Query 17207 AATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266
|| ||||| || ||| || | || || ||||| | || || || ||||| ||
Sbjct 8987 GATCTCTCTCTT---TGT-TATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTCA 8932
Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTG 17325
|| || || ||||| || || ||||| |||||||| |||||| || ||||| | | |||
Sbjct 8931 GAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCTTCAGAGACTTG 8873
Query 17326 AACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGA 17384
|| || || | |||||| || ||||| || ||||| ||||| |||||||
Sbjct 8872 TACATCTGACAT-GAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGA 8814
Query 17385 AAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAGAACGCGCCAGTCC 17443
| || || | | || || ||||| | ||| |||| | | ||| ||||||
Sbjct 8813 AGAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCTCCCAGTCA 8755
Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503
| |||| |||| ||| |||||||||| |||||| || || | || || ||
Sbjct 8754 CGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTG 8695
Query 17504 TACATATTCCAAAT 17517
||||| | ||| ||
Sbjct 8694 TACATCTCCCAGAT 8681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515816816555040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |