Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq27195 118 1e-21
seq70799 91.5 2e-13
>seq27195
Length=13093
Score = 118 bits (130), Expect = 1e-21
Identities = 384/586 (66%), Gaps = 13/586 (2%)
Strand=Plus/Minus
Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255
|| || || ||||| ||||| |||| |||||||||| ||| | ||||| || |||
Sbjct 9237 ATCAGGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAA 9178
Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315
|||||||| ||||| |||||||| || | |||||| |||| | || || ||
Sbjct 9177 GTTAACCCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAG 9118
Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375
||||| ||||| || || | || ||||||| | |||||| ||| | || | | |
Sbjct 9117 AAGAAGATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCCA 9058
Query 16376 TTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435
| || |||||| || |||||| ||||| | | ||| || ||||| ||
Sbjct 9057 T--CG-ATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATT 9001
Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495
|| || | | ||| | || | |||| | || || ||||| | || | |||
Sbjct 9000 GCGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTA 8941
Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTC 16554
||||| || || || || ||||| || || ||||| ||||| ||| ||||| || || ||
Sbjct 8940 TACATCTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCTTC 8882
Query 16555 CGCTATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613
| | |||||| || || | ||||| || || ||||| ||||| ||||||
Sbjct 8881 AGAGACTTGTACATCTGACAT-GAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAG 8823
Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAA---ATATTTTTCGTCAGATGTAAGAA 16670
||| || || || || | | ||| || ||||| | || | |||| | || |||
Sbjct 8822 ATGCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTC-GTTG--AGAT 8766
Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730
| | ||| || | |||| |||| ||| |||||||| | ||||| || ||
Sbjct 8765 TCTCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTT 8706
Query 16731 CTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776
| || || || ||||| | ||| || | ||| || || |||||
Sbjct 8705 CGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAA 8660
>seq70799
Length=497
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 119083 GCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACATACGTAAATAC 119142
|| || || ||||| | | ||||||||||||| ||||||||||||||||| || | |
Sbjct 194 GCTCTATCTGGAGTATCAGTCCATTCCAGTATCTTTTTAGCCCAGTACATGCGAAGGAAA 253
Query 119143 CCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGT 119202
|||||||| || || || || | || ||| | |||||| | ||||| ||| ||| |||
Sbjct 254 CCGTGCATCTTGCCTTCCTTTACCAACTGTATTTGTGCAGAATTCCACAGATCATCATGT 313
Query 119203 GTACG 119207
|| ||
Sbjct 314 GTGCG 318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 509706096908960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |