Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq27195 118 1e-21 seq70799 91.5 2e-13 >seq27195 Length=13093 Score = 118 bits (130), Expect = 1e-21 Identities = 384/586 (66%), Gaps = 13/586 (2%) Strand=Plus/Minus Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 || || || ||||| ||||| |||| |||||||||| ||| | ||||| || ||| Sbjct 9237 ATCAGGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAA 9178 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315 |||||||| ||||| |||||||| || | |||||| |||| | || || || Sbjct 9177 GTTAACCCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAG 9118 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 ||||| ||||| || || | || ||||||| | |||||| ||| | || | | | Sbjct 9117 AAGAAGATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCCA 9058 Query 16376 TTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 | || |||||| || |||||| ||||| | | ||| || ||||| || Sbjct 9057 T--CG-ATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATT 9001 Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || || | | ||| | || | |||| | || || ||||| | || | ||| Sbjct 9000 GCGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTA 8941 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTC 16554 ||||| || || || || ||||| || || ||||| ||||| ||| ||||| || || || Sbjct 8940 TACATCTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCTTC 8882 Query 16555 CGCTATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | | |||||| || || | ||||| || || ||||| ||||| |||||| Sbjct 8881 AGAGACTTGTACATCTGACAT-GAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAG 8823 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAA---ATATTTTTCGTCAGATGTAAGAA 16670 ||| || || || || | | ||| || ||||| | || | |||| | || ||| Sbjct 8822 ATGCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTC-GTTG--AGAT 8766 Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730 | | ||| || | |||| |||| ||| |||||||| | ||||| || || Sbjct 8765 TCTCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTT 8706 Query 16731 CTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 | || || || ||||| | ||| || | ||| || || ||||| Sbjct 8705 CGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAA 8660 >seq70799 Length=497 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 119083 GCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACATACGTAAATAC 119142 || || || ||||| | | ||||||||||||| ||||||||||||||||| || | | Sbjct 194 GCTCTATCTGGAGTATCAGTCCATTCCAGTATCTTTTTAGCCCAGTACATGCGAAGGAAA 253 Query 119143 CCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGT 119202 |||||||| || || || || | || ||| | |||||| | ||||| ||| ||| ||| Sbjct 254 CCGTGCATCTTGCCTTCCTTTACCAACTGTATTTGTGCAGAATTCCACAGATCATCATGT 313 Query 119203 GTACG 119207 || || Sbjct 314 GTGCG 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509706096908960