Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq34509 93.3 3e-14 seq255492 89.7 4e-13 >seq34509 Length=4973 Score = 93.3 bits (102), Expect = 3e-14 Identities = 248/371 (67%), Gaps = 10/371 (3%) Strand=Plus/Plus Query 18870 CAAGGAATCGATCAGCT-GCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCG 18928 |||||| | ||||| || ||| | ||| || || | || |||| || || || || Sbjct 2235 CAAGGATTTGATCAACTCGCAGA-TGTGATCGACAAGATAAAAAACAATCCTGACGATCG 2293 Query 18929 ACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATG 18988 || || || |||| |||||||||| ||| | || |||| ||| |||||||| Sbjct 2294 GCGCATTATATTATCAGCTTGGAATCCTTCTGATCTTAAGTTGATGGCACTTCCTCCATG 2353 Query 18989 TCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAG 19048 |||| ||| ||||| || || ||| |||| || | || || ||| | || ||| | Sbjct 2354 CCACATGTTTGCACAGTTCTATGTGGCAGACGGGGAGCTCTCATGTCAAATGTATCAGCG 2413 Query 19049 ATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTA 19108 || | || ||||| ||||| || ||||| |||||||| || | |||||||| | Sbjct 2414 TTCAGCAGACATGGGTCTTGGTGTGCCGTTTAACATTGCGTCCTACTCTCTTCTTACTTG 2473 Query 19109 CATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGC 19168 |||| | || || || | ||| | || ||||| || ||| || ||||||| Sbjct 2474 CATACTCGCTCACGTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTATTGGGGATGG 2533 Query 19169 ACATATTTACTTGAATCATATAGATGCTT-TAAAAGTGCAGCTAGCTC-GATCCC--CAA 19224 ||| | ||| |||||| | || || | | | | ||| || || || ||| ||| Sbjct 2534 TCATGTGTACAAAAATCATGT-GAGGCCTCTGCAGGAGCAACT---TCAGAACCCACCAA 2589 Query 19225 AACCTTTTCCT 19235 ||||||||||| Sbjct 2590 AACCTTTTCCT 2600 >seq255492 Length=11799 Score = 89.7 bits (98), Expect = 4e-13 Identities = 246/369 (67%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 18870 CAAGGAATCGATCAGCT-GCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCG 18928 |||||| | ||||| || ||| | ||| || || | || | || || || || || Sbjct 6767 CAAGGATTTGATCAACTCGCAGA-TGTAATCGACAAGATCAGAAACAATCCTGATGATCG 6709 Query 18929 ACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATG 18988 || || || ||||| |||||||||| || | || |||| || |||||||| Sbjct 6708 CCGCATTATATTATCGGCTTGGAATCCTTCTGACCTTAAGTTGATGGCGCTTCCTCCATG 6649 Query 18989 TCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAG 19048 |||| ||| ||||| || || ||| | || || | || || ||| | || ||| | Sbjct 6648 CCACATGTTTGCACAGTTCTATGTAGCAGAAGGGGAGCTCTCATGTCAAATGTATCAGCG 6589 Query 19049 ATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTA 19108 || | ||| ||||| ||||| || ||||| ||||||||| || | |||||||| | Sbjct 6588 TTCAGCGGACATGGGTCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTACTTG 6529 Query 19109 CATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGC 19168 |||| | || || || | ||| | || ||||| | ||| || |||||||| Sbjct 6528 CATACTCGCTCACGTGTGTGATCTTGTTCCTGGTGATTTTACCCATGTTATTGGGGATGC 6469 Query 19169 ACATATTTACTTGAATCATAT-AGATGCTTTAAAAGTGCAGCTAGCTCGATCC-CCAAAA 19226 ||| | ||| |||||| | ||| || | | | ||| || | |||| |||||| Sbjct 6468 TCATGTGTACAAAAATCATGTGAGAC-CTCTGCAGGAGCAACTT-CAGAATCCACCAAAA 6411 Query 19227 CCTTTTCCT 19235 ||||||||| Sbjct 6410 CCTTTTCCT 6402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398202878893260