Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq255492 109 4e-19 seq34509 105 5e-18 seq29830 95.1 9e-15 seq125822 86.0 5e-12 seq29837 86.0 5e-12 >seq255492 Length=11799 Score = 109 bits (120), Expect = 4e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || ||| |||| |||| || ||||| || |||| | || ||||| | Sbjct 6466 TGAGCATCCCCAATAACATGGGTAAAATCACCAGGAACAAGATCACACACGTGAGCGAGT 6525 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||||| ||||| || | ||||| || ||| Sbjct 6526 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGACCCATGTCCGCT 6585 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCT 101855 || | ||||||| |||||| || |||| Sbjct 6586 GAACGCTGATACATTTGACATGAGAGCT 6613 >seq34509 Length=4973 Score = 105 bits (116), Expect = 5e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 ||| |||| || ||| ||||||||| || ||||| || |||| | || ||||| | Sbjct 2536 TGACCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCACACACGTGAGCGAGT 2477 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| ||||||||||| ||||| || | ||||| || ||| Sbjct 2476 ATGCAAGTAAGAAGAGAGTAGGACGCAATGTTAAACGGCACACCAAGACCCATGTCTGCT 2417 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCT 101855 || | ||||||| |||||| || |||| Sbjct 2416 GAACGCTGATACATTTGACATGAGAGCT 2389 >seq29830 Length=9971 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/206 (72%), Gaps = 12/206 (6%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 || ||||| | ||||| || | |||||| || |||||||||||||| || || | Sbjct 1268 ACGTGAGCGAGAATGCACGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTACGCCGAGA 1209 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATAAAA 101874 |||||||| ||||| | ||||||| |||||| ||||| | |||| || || |||||||| Sbjct 1208 CCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTCGCA-ACATAAAA 1150 Query 101875 TTGACTTAATACA--TGACAAGGCGGCA---ACACCATTTTAGGAATGTCTGAAACATTC 101929 || | || ||| || || || || | || || |||| || || ||| |||| Sbjct 1149 CTG--TGAAAACATGTGGCATGGAGGAAGTGCCATCAGTTTAAGA---TCAGAAGGATTC 1095 Query 101930 CAAGCACACATTAACATCCTTCTATC 101955 ||||| |||||| |||| || ||| Sbjct 1094 CAAGCCGACATTATAATCCGTCGATC 1069 >seq125822 Length=25115 Score = 86.0 bits (94), Expect = 5e-12 Identities = 203/307 (66%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 101601 TAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGTCTAGGAG 101660 |||| || ||||| | | ||||| | || || | || || || |||||| | || | Sbjct 8432 TAAAATCTTCAATTCGTTCAACATCCCGGGCGAAACGAATCGTCGGCAACGGTTTTGGTG 8373 Query 101661 TTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTA 101720 | || |||| || | || | ||| | |||| |||||| || ||||| |||| Sbjct 8372 TCCGGCTCAATTGAAGATTTACCTGATCGAGATGATTCGAATAGATATGCGCATCCCCTA 8313 Query 101721 TAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAA 101780 ||||| | || || ||| | || ||| |||||||||||||||| || | | Sbjct 8312 ACGTATGCACGAAATCCCCAACTTCAAGCTTACAGACATGAGCAATCATGTGCGTCAGCA 8253 Query 101781 GAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACA 101840 || || |||||| |||||||| || ||||| | ||| || || | ||| || | Sbjct 8252 AAGCGTAAGAAGCAATATTAAATGGAACACCTAAAAAGACATCGGCAGACCGTTGGTAAA 8193 Query 101841 GTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCA 101900 | || || || | |||||| | ||||||||||||| | | || || ||||||| Sbjct 8192 GCTGGCACGACAACTTTCCGTTCGCGACATAAAATTGAAACAGCAGGTGGCAGGGCGGCA 8133 Query 101901 ACACCAT 101907 | |||| Sbjct 8132 AGGCCAT 8126 >seq29837 Length=4748 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/206 (71%), Gaps = 12/206 (6%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 || ||||| | ||||| || | |||||| || |||||||||||||| || || | Sbjct 3492 ACGTGAGCGAGAATGCACGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTACGCCAAGA 3551 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATAAAA 101874 ||||| || ||||| | ||||||| ||| || ||||| | |||| || || |||||||| Sbjct 3552 CCCATGTCGGCTGAGCGCTGATACATTTGGCATGAAAGTTCTCCATTCGCA-ACATAAAA 3610 Query 101875 TTGACTTAATACA--TGACAAGGCGGCA---ACACCATTTTAGGAATGTCTGAAACATTC 101929 || | || ||| || || || || | || || |||| || || ||| |||| Sbjct 3611 CTG--TGAAAACATGTGGCATGGAGGAAGTGCCATCAGTTTAAGA---TCAGAAGGATTC 3665 Query 101930 CAAGCACACATTAACATCCTTCTATC 101955 ||||| |||||| |||| || ||| Sbjct 3666 CAAGCCGACATTATAATCCGTCGATC 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360074662190228