Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq146431 181 1e-40 seq27195 159 4e-34 seq205226 107 2e-18 >seq146431 Length=15796 Score = 181 bits (200), Expect = 1e-40 Identities = 403/594 (68%), Gaps = 8/594 (1%) Strand=Plus/Plus Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 |||||||| |||||||| ||||||| ||| ||||||| || |||||||| || || Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 24247 || | ||| ||||| || ||||| || |||||||| || || || || | | | || || Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAA-CAGAAGCTACCTGA 4240 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG-GCGCTGT 24306 ||||| || ||||| || || || || | | || ||| || || | | | Sbjct 4241 GAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATC- 4299 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 ||| ||||| | |||||| | || ||||| |||||||| ||||| || | | Sbjct 4300 CATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTG 4359 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | || |||| | | | || || ||||||| | || ||||| | || ||||||| Sbjct 4360 CGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTAT 4419 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || ||||| || || ||||| || ||||||||||||||||| | || |||| Sbjct 4420 ACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGG 4479 Query 24487 TAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | ||||| ||| ||| ||||| || | |||||| || ||||||||| Sbjct 4480 AGACTTGTACATCT-GACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGAT 4538 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT 24604 || || || || || | || ||||| || || | ||| || | ||| || || | Sbjct 4539 GCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTC 4597 Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 ||| ||| |||| |||| ||| |||||||| | ||||| || ||||| || || Sbjct 4598 CCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGC 4657 Query 24665 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 || || ||||| | |||||| | | || ||||| ||||| ||| ||||| Sbjct 4658 TTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711 >seq27195 Length=13093 Score = 159 bits (176), Expect = 4e-34 Identities = 398/594 (67%), Gaps = 8/594 (1%) Strand=Plus/Minus Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 |||| || |||||||||||||||| || ||||||| ||||| ||||| || || Sbjct 9237 ATCAGGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAA 9178 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 24247 || | || ||||| || || || ||||| ||||| || || || || | | | || || Sbjct 9177 GTTAACCCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAA-CAGAAGCTACCGGA 9119 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC-CGGCGCTGT 24306 ||||| || ||||| || ||| || || | | || ||| | || | | | | Sbjct 9118 GAAGAAGATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATC- 9060 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 ||| ||||| | |||||| | || ||||| || ||||| ||||| || || | Sbjct 9059 CATCGATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTG 9000 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | ||||||| | | | || || ||||||| | |||||||| | | ||||||| Sbjct 8999 CGCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTAT 8940 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || ||||| || || ||||| || || || |||||||||||| | || || | Sbjct 8939 ACATCTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAG 8880 Query 24487 TAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | ||||| ||| ||| ||||| || | ||| || || ||||||||| Sbjct 8879 AGACTTGTACATCT-GACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGAT 8821 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT 24604 || || || || || | || ||||| || || | ||| || | ||| || || | Sbjct 8820 GCGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCTC 8762 Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 ||| ||| |||| |||| ||| |||||||| | ||||| || ||||| || || Sbjct 8761 CCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGC 8702 Query 24665 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 || || ||||| | |||||| | | || ||||| ||||| ||| ||||| Sbjct 8701 TTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648 >seq205226 Length=4968 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | || || | |||| | || | || ||| |||| |||||| Sbjct 4506 TCCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 4565 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| ||| | ||||| || || ||||||| |||||| | || |||||||| ||| || Sbjct 4566 ATTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGA 4625 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || |||| || || || ||| ||||||||||| || Sbjct 4626 AACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAAT 4685 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||||| || ||||||||| |||| | ||||| ||||| Sbjct 4686 TCCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591738362053440