Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq54724 104 2e-17 seq214945 96.9 3e-15 seq210337 95.1 1e-14 seq265878 87.8 2e-12 seq236154 87.8 2e-12 seq204555 87.8 2e-12 seq26661 87.8 2e-12 seq253709 86.0 5e-12 >seq54724 Length=7877 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || ||||| || |||||||||||| ||| || | || Sbjct 1875 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACCATTACCCTCGAGGTTGAGAGCTCA 1934 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | || || || || ||||||||| | || || || Sbjct 1935 GACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCAG 1994 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| || || ||||| || || || |||| ||||||| |||||| Sbjct 1995 CAGAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAAT 2054 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||| || |||||||||||| ||||||| || Sbjct 2055 ATTCAGAAAGAGTCTACTCTTCACTTGGTGTTGCG 2089 >seq214945 Length=15579 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 29058 AAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT 29117 |||||||| || || ||| ||||||||||| |||||||| || ||||| || |||||| Sbjct 3602 AAAGAAGGAGTCCCTTCAGACCAACAAAGACTGATCTTTGCCGGTAAACAGCTCGAAGAT 3543 Query 29118 TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGA 29177 | ||| | || |||||||| || || |||||||| ||||| ||| |||| | | Sbjct 3542 GGCCGTACTTTAGCTGATTACAACATCCAAAAGGAATCAACTCTCCACTTGGTTCTCAGG 3483 Query 29178 TTACGAGGAGG 29188 ||| ||||||| Sbjct 3482 TTAAGAGGAGG 3472 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| || || || ||||||| || |||||||| || ||||| || || Sbjct 7896 GAGAAAGAAGGAGTCCCTTCTGACAAACAAAGCCTGATCTTTGCCGGTAAACAGCTCGAG 7837 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | ||| |||||||||||||||| || |||||||| || |||||| | ||||| Sbjct 7836 GACGGCCGTACTTTGGCCGATTACAATATCCAAAAGGAATCAACACTTCACCTTGTGTTG 7777 Query 29175 CGATTACGAGGAGGG 29189 || | || || ||| Sbjct 7776 CGTCTTCGTGGTGGG 7762 >seq210337 Length=1863 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || || ||||||||||| || ||| | || Sbjct 812 ATGCAGATTTTCGTGAAGACCCTTACCGGTAAAACCATTACTCTTGAGGTGGAGAGCTCA 753 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| || || || || |||||| | || ||||| Sbjct 752 GACACGATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCAG 693 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||||||||| || || || || || || ||| ||| ||||||||||||| Sbjct 692 CAAAGACTTATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGGACTTTGGCCGATTACAAC 633 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| || || |||||| | ||||| || | || ||||| Sbjct 632 ATTCAGAAGGAGTCAACCCTTCACCTTGTGTTGCGTCTTCGTGGAGG 586 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || || ||||| ||||| || |||||| || || | | Sbjct 585 AATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTC 526 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| |||||| || |||||||| | || || || Sbjct 525 GGACACTATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGGATCCCTCCGGACCA 466 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||||| ||||| || || ||||| || || ||| ||| |||| |||||||| Sbjct 465 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGGACTTTGGCGGATTACAA 406 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||| ||||| |||||||| |||| Sbjct 405 TATTCAGAAAGAATCGACTCTTCATTTGGT 376 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || ||||| |||||||||||||| || || || || || ||| Sbjct 1403 GACAAGGAAGGTATCCCTCCGGATCAGCAAAGACTTATCTTCGCCGGTAAGCAGCTTGAA 1344 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| |||| ||||||||||| ||||| || || ||||| ||| | ||||| Sbjct 1343 GATGGAAGGACTCTGGCTGATTACAATATCCAGAAAGAGTCCACTCTCCACCTTGTGTTG 1284 Query 29175 CG 29176 || Sbjct 1283 CG 1282 >seq265878 Length=14687 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 |||||||| ||| | |||||||| || |||||||| |||||| | ||| |||| ||| Sbjct 5343 GATCAACAGAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGCCGAACATTGGCGGAT 5402 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| || || |||||||| |||| || Sbjct 5403 TACAATATCCAGAAAGAGTCGACTCTTCATTTGGTCTT 5440 >seq236154 Length=204 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || ||| |||||| | | |||||||| || || ||||| ||| Sbjct 168 GACAAAGAAGGTATCCCACCAGACCAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAA 109 Query 29115 GATT--CCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGT 29172 || | | ||| | |||| ||||| || ||||||||||||||||||||| |||||| Sbjct 108 GACGGACGCACACTTT--CCGACTACAACATCCAGAAGGAATCTACTCTTCACTTGGTGT 51 Query 29173 TACGATTACGAGGAGG 29188 | || | ||||| || Sbjct 50 TGCGTCTCCGAGGTGG 35 >seq204555 Length=10983 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | || || | || || |||||||| || ||| || | || Sbjct 1490 ATGCAGATATTCGTTAAGACCCTTACCGGTAAAACCATAACTTTGGAAGTTGAGAGCTCA 1431 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| ||| ||| ||||||||||| | || || || Sbjct 1430 GACACGATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCGGACCAG 1371 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || || ||||||||||| |||||||| |||||| || | | || || || |||| Sbjct 1370 CAGAGGCTAATCTTTGCGGGGAAACAACTCGAAGATGGTCGGACATTA--GCGGACTACA 1313 Query 29140 ATATTCAGAAGGAATCTACTCTTCAC 29165 | |||||||| || || ||||||||| Sbjct 1312 ACATTCAGAAAGAGTCAACTCTTCAC 1287 >seq26661 Length=2801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| | || || || || || ||| ||| |||| | Sbjct 946 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGTTCT 1005 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | ||||| ||| || || || |||||| | || ||||| Sbjct 1006 GACACGATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 1065 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || ||| |||||||| | || |||| |||||||| Sbjct 1066 CAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCCGTACCTTGGCGGATTACAAC 1125 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || |||||||| || |||||| ||||| || Sbjct 1126 ATCCAAAAGGAATCAACGCTTCACTTGGTGCTA 1158 >seq253709 Length=6257 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||| || || ||| ||||||||||| |||||||| || ||||| || ||| Sbjct 5233 GAGAAAGAAGAAGTCCCTTCAGACCAACAAAGACTGATCTTTGCCGGTAAACAGCTCGAA 5292 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| | || |||||||| ||||| | |||||| ||||| ||| |||| | Sbjct 5293 GATGGTCGTACTTTAGCTGATTACAACATTCAAATGGAATCAACTCTCCACTTGGTTCTC 5352 Query 29175 CGATTACGAGGA 29186 | ||| ||||| Sbjct 5353 AGGTTAAGAGGA 5364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426940977646340