Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq34509 96.9 4e-15 seq255492 89.7 6e-13 >seq34509 Length=4973 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 145680 CTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTC 145739 || ||| ||| ||| || || ||| || || | ||||| | || ||||| || || Sbjct 2567 CTGCAGAGGCCTCACATGATTTTTGTACACATGACCATCCCCAATAACATGGATAAAATC 2508 Query 145740 CCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTAT 145799 || || | || | | ||| |||| ||| | || || || |||||| || || Sbjct 2507 ACCAGGAACAAGATCACACACGTGAGCGAGTATGCAAGTAAGAAGAGAGTAGGACGCAAT 2448 Query 145800 GTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTC 145859 ||| || ||||| || || |||||||| | || ||||| |||| || || |||||||| Sbjct 2447 GTTAAACGGCACACCAAGACCCATGTCTGCTGAACGCTGATACATTTGACATGAGAGCTC 2388 Query 145860 CCCGCCCGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||| | ||||| |||||||| ||| | | |||||| || || || ||||| Sbjct 2387 CCCGTCTGCCACATAGAACTGTGCA-AACATGTGGCATGGAGGAAGTGCCAT 2337 >seq255492 Length=11799 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 145761 GTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCC 145820 ||| |||| ||| | || || || |||||| || ||||| || ||||| || || || Sbjct 6516 GTGAGCGAGTATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGACC 6575 Query 145821 CATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTG 145880 ||||||| | || ||||| |||| || || ||||||||||| | || || |||||||| Sbjct 6576 CATGTCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCTTCTGCTACATAGAACTG 6635 Query 145881 -GCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 ||| | | |||||| || || || ||||| Sbjct 6636 TGCA-AACATGTGGCATGGAGGAAGCGCCAT 6665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588105736961120