Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq26661 125 6e-24 seq153189 109 5e-19 seq54724 109 5e-19 seq210337 105 6e-18 seq117562 104 2e-17 >seq26661 Length=2801 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | || |||||||| |||||||| ||||||||| Sbjct 1628 CCTCCACGAAGCCTGAGGACGAGATGAAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 1569 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | |||| || |||| || || || || || || | || | ||||||||| ||| || Sbjct 1568 AAGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGA 1509 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| |||||| | | | | || || | || | Sbjct 1508 ATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTGTCAATTGTGTCTGAGCTTTCAACT 1449 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||||||||||| || || || |||||||| || ||||| Sbjct 1448 TCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 1402 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || ||||| || || ||||| || |||||| Sbjct 2312 CCACCACGGAGACGGAGGACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAATCCGCC 2253 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| |||||||| || ||| | || || | |||||||||| || Sbjct 2252 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCAAAGATGAGACGCTGCTGGTCCGGTGGG 2193 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | | || ||| ||| | Sbjct 2192 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATTGTGTCAGAACTCTCGACT 2133 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || ||||||||||||| ||||| || ||||| ||||| Sbjct 2132 TCCAGGGTGATAGTCTTGCCGGTTAGGGTTTTCACGAATATCTGCAT 2086 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| |||| ||| || ||||| |||||||||||||| ||||| || || | ||||| Sbjct 2066 ACCAAGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCGGCCAGTGTACGGCCATCCTCG 2007 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 ||||| || || || | || || | |||||||||| || | ||||| ||||| Sbjct 2006 AGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCTTTGTCCTGA 1947 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 ||||| |||||| | | ||| || || | |||| || | |||||| ||||| Sbjct 1946 ATCTTAGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCAAGGGTAATAGTCTTA 1887 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || || || || || |||||||| Sbjct 1886 CCAGTCAAGGTCTTCACGAAGATTTGCAT 1858 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| || | ||| ||||||||||| ||||| ||||| || || ||| | |||| || Sbjct 1839 CACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGACCGTCTTC 1780 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 || || || || || | || | ||||||||||||| || | ||||||||||| Sbjct 1779 AAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTG 1720 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 ||| ||| |||||| | | | || || | ||| || | |||||| ||||| Sbjct 1719 GATTTTTGCTTTCACGTTATCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAATAGTCTT 1660 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || || || |||||||| || ||||| Sbjct 1659 GCCCGTCAAGGTCTTGACAAAGATCTGCAT 1630 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| ||||||| || | || || |||||||| ||||| || |||||| Sbjct 1172 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCCGCC 1113 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | || |||| || || || ||| | ||||| |||||||| ||| || Sbjct 1112 AAGGTACGGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 1053 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||||| || || | | ||| || ||| ||| Sbjct 1052 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACC 993 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| ||||| | ||||| || || || ||||| Sbjct 992 TCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 946 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | || ||||||||||| ||||| ||||| || Sbjct 1400 CCTCCACGAAGCCTGAGGACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCG 1341 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| || || || || || | || | |||||||||||| || Sbjct 1340 AGAGTACGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGA 1281 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | | || ||| ||| Sbjct 1280 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAACTCTCAACC 1221 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| |||||||| || || || ||||| || || ||||| Sbjct 1220 TCGAGGGTAATCGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCAT 1174 >seq153189 Length=17048 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| |||||||| ||||||||||||||||| || ||||| || || | | ||||| Sbjct 14718 CACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCATCCTC 14659 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 |||||||| || || | || || | |||||||||| || | ||||||||||| Sbjct 14658 GAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTG 14599 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| || || | | | | || || | |||| || | |||||| ||||| Sbjct 14598 GATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACCTCGAGGGTAATAGTCTT 14539 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || |||||||| || || ||||| Sbjct 14538 ACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| |||||||| ||||||||||||||||| || ||||| || || | | ||||| Sbjct 14946 CACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCATCCTC 14887 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 |||||||| || || | || || | |||||||||| || | ||||||||||| Sbjct 14886 GAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTG 14827 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| || || | | | | || ||| | ||| ||| | ||| || ||||| Sbjct 14826 GATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCAAGGGTGATTGTCTT 14767 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || | || ||||| || || ||||| Sbjct 14766 GCCAGTAAGAGTCTTGACGAAAATCTGCAT 14737 >seq54724 Length=7877 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| || | ||| ||||| || ||||| || ||||| ||||| ||| | ||||||| Sbjct 2084 CACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCCAGAGTTCTGCCGTCCTC 2025 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 || || || || ||| | || | ||||||||||||| || | ||||| ||||| Sbjct 2024 GAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCTTTGTCCTG 1965 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| |||||| | | ||| || || | ||| || | ||||||||| || Sbjct 1964 GATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTAATGGTTTT 1905 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || |||||||| || ||||| Sbjct 1904 ACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875 >seq210337 Length=1863 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| ||||| || |||||||| || ||||||||||| ||| Sbjct 1498 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCC 1557 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | || || || ||||| || || | || | || ||||| ||| || Sbjct 1558 AAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGA 1617 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||||| || || | | ||| || ||| | ||| Sbjct 1618 ATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 1677 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 || | || |||||||| || || | |||||| || ||||||||||| | ||| Sbjct 1678 TCGAGAGTTATGGTCTTTCCAGTAAGCGTTTTCACGAATATTTGCATCTGGAA 1730 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | || |||||||| || ||||| ||||| |||||||| | | || Sbjct 829 AGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGTCCATCT 888 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || | ||| || || ||| | |||||||||||||||||| || | || || ||||| Sbjct 889 TCTAACTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGTGGGATTCCCTCTTTGTCC 948 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||| || | | | || || | |||| |||| || ||||| Sbjct 949 TGGATCTTGGCTTTGACATTATCAATGGTGTCTGAGCTCTCCACCTCCAAAGTGATGGTT 1008 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| | || |||||||| || ||||| Sbjct 1009 TTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 1040 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||||||||| ||||| ||||| || ||||| || || | | || Sbjct 1057 AGTACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATCCGCAAGAGTACGTCCATCT 1116 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || || || || ||| | |||||||||||||| ||| || | ||||| ||||| Sbjct 1117 TCAAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATACCTTCTTTGTCC 1176 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| ||||| | ||| || | |||||||| Sbjct 1177 TGGATCTTAGCCTTGACATTATCGATCGTATCGGAGCTCTCAACCTCAAGAGTAATGGTT 1236 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | || |||||||| |||||||| Sbjct 1237 TTCCCAGTGAGAGTCTTGACAAAGATTTGCAT 1268 >seq117562 Length=2070 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| ||||| || |||||||| || ||||||||||| ||| Sbjct 1229 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCC 1170 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | || || |||||||| || || | || | || ||||| ||| || Sbjct 1169 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGA 1110 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||||| || || | | ||| || ||| | ||| Sbjct 1109 ATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 1050 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| || || | ||||| || ||||||||||| Sbjct 1049 TCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTCACGAATATTTGCAT 1003 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | || |||||||| || ||||| || |||||||| || |||| Sbjct 1442 AGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCTTCCGTCT 1383 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || || | |||||||| ||||| ||| || | ||||||||||| Sbjct 1382 TCAAGCTGCTTACCGGCGAAGATAAGTCTTTGCTGATCCGGAGGAATACCTTCCTTGTCC 1323 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||| || | | | |||||| | || ||| | |||||||||| Sbjct 1322 TGGATCTTAGCTTTGACGTTATCAATAGTATCTGAGCTTTCGACTTCGAGGGTAATGGTC 1263 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| || || ||||| || |||||||| Sbjct 1262 TTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 1231 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | ||| ||||| || ||||| || ||||| || | ||| | | || Sbjct 1898 AGTACCAAATGAAGAGTCGACTCTTTCTGAATATTGTAGTCTGCTAAGGTGCGTCCATCT 1839 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || || || || ||| | |||||||||||||| ||| || | ||||||||||| Sbjct 1838 TCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATCCCTTCCTTGTCC 1779 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | | | ||| || | ||| |||| |||||| ||| Sbjct 1778 TGAATCTTAGCCTTGACATTATCAATAGTGTCCGAGCTCTCAACCTCCAAGGTAATAGTC 1719 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || || || || ||||| ||||||||| Sbjct 1718 TTGCCTGTCAAAGTCTTCACAAAGATTTGCATT 1686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420883968819248