Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_001884.1 Length=134416 Score E Sequences producing significant alignments: (Bits) Value seq158858 354 7e-93 seq217940 93.3 4e-14 seq10519 91.5 1e-13 >seq158858 Length=235449 Score = 354 bits (392), Expect = 7e-93 Identities = 589/837 (70%), Gaps = 18/837 (2%) Strand=Plus/Plus Query 130327 ATGAAAATTGATTATGTTTCAGATCTCCATATAAATCATTGGATTCCTTGGAATGTAAAT 130386 |||||||||||||||| ||||||| | || || || ||||| | ||||| ||| Sbjct 204490 ATGAAAATTGATTATGCTTCAGATTTACACGCCAACCACTGGATGCTTTGGACAAATAAT 204549 Query 130387 CAGATTAAGTGGGAGAAGC-GAACAAGAGAAATTGTAAATAGGTTAATCTCAAACGGTAA 130445 || || |||||||| |||| ||||||||||| | || | | |||| ||| ||||| Sbjct 204550 CAAATGAAGTGGGA-AAGCAGAACAAGAGAATTAACAAGAAAGCTAATAGAAAATGGTAA 204608 Query 130446 TGGGGAGGTATTGGTCATTGCC-GGCGATTTTACTGAATGGAATCAACAAACTTTATGGG 130504 ||| || || || | ||| || || || |||| |||||||||||||||| | |||||| Sbjct 204609 TGGAGAAGTTCTGAT-ATTACCTGGTGACTTTAGTGAATGGAATCAACAATCCTTATGGA 204667 Query 130505 TTTTAGATGAGGCAGCAAAGCAATACGAGAAGGTTTACTTTACATATGGTAATCATGATC 130564 | |||||||| ||||||||||| || || | || || |||||| ||| || |||||| Sbjct 204668 TATTAGATGAAGCAGCAAAGCATTATGAAAGAGTATATTTTACAGTTGGAAACCATGATA 204727 Query 130565 TTTA-TTTACTT-AGCAAGAGCCAAAAAAGGAAATACTCAGACTCGTTAGGCAGGTTGAA 130622 | || ||| || || | |||||||| | ||| || ||| || |||| | | || Sbjct 204728 TGTACCTTATTTCAGGA--AGCCAAAAGAAGAAGTATAAAGATTCTATAGGTCGAATTAA 204785 Query 130623 TGATCTAATTCAAAAAGCTGCTGACATGAAAAATGTAACACCATTAATTAAGACAACTGA 130682 ||| || || |||| ||| |||| || |||||| || | |||| | || Sbjct 204786 TGAACTGATAGAAAAGGCTTCTGAAATTCCTAATGTAGTTCCTCTTGTTAAAAATGTAGA 204845 Query 130683 AACATACAAAGGAAAAGTCTTTGCAGGAGATGTAATGTGGTACCTTCCAAAAGGAATCGA 130742 ||||||||||| ||||| || ||||||||||| ||||||||||||| ||| | | Sbjct 204846 TACATACAAAGGGAAAGTATTCGCAGGAGATGTGTTGTGGTACCTTCCTAAATCACAAGC 204905 Query 130743 AGGATGGGACTTCTTTAAAGGAGTATCTAACGATTCTAATTACATTTGGCTTAATGGTTA 130802 | ||||| ||| || ||||| || ||||||| ||| || | | ||||| | Sbjct 204906 TGATTGGGAGTTCCTTCGCAATGTATCCAATGATTCTAGTTATATATCAATCAATGG--A 204963 Query 130803 TAACAAAGTAGATGGTGT---AAGAGCGATGTGGAAAGAATCAATGGATTGGTATGAAAC 130859 || |||| || ||| |||| | ||||| || |||||||||||||| || Sbjct 204964 TATGCGGGTAG-TGATGTGCCAAGAAAACTACATAAAGAGTCTATGGATTGGTATGACAC 205022 Query 130860 GCTTGAAAATACACAAGTTGATGTATTTGTCTCACATGTTCCACCTGTTCACAATCCTTA 130919 | | ||| ||||||| |||||||||||||| || |||||||| || || || ||||||| Sbjct 205023 GTTAGAAGATACACATGTTGATGTATTTGTTTCTCATGTTCCGCCAGTACATAATCCTTT 205082 Query 130920 TTCTCCATTTGAGCCTAATACATGCTACATGGTTGATGTCCCGTTCATTAACGCAAAACA 130979 | | || | ||| || ||||| || || ||| ||||| || || ||||| ||| | || Sbjct 205083 TACGCCGTATGAACCAAATACTTGTTATATGACGGATGTTCCTTTTATTAATGCAGAGCA 205142 Query 130980 CTGGGTTTGTGGACATGATCATTTACAAGCTGAGTTTGACAAAGATGGAACGAGCTTTCA 131039 ||| ||||||||||||| ||| | |||| ||||||||| |||| ||| || || Sbjct 205143 TTGGATTTGTGGACATGACCATATTCAAGATGAGTTTGAAAAAGCGGGAGTTCAATTCCA 205202 Query 131040 CATGAATTGTATCGGATACCCGTATGACTATGATAATTATCCGAGTGTCAATGTGATACC 131099 |||||| || |||||||| || | || ||| ||||| | ||||| | || Sbjct 205203 TATGAATGCAATTGGATACCCAGATCATTACTCTAACTATCCTAAAAAGAATGTAGTGCC 205262 Query 131100 TG--GTGAAGAAGTAGATTCATATAAAACGTTTGAGCTTAAAACATTCGAGATTTAG 131154 | | ||| | |||| | ||||| | |||| |||||||||| || || ||| Sbjct 205263 AGAAGGGAATA--TAGACGAACATAAATCCTTTGGTATTAAAACATTTGAAATATAG 205317 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 126182 TACGAAAATGAATTGGAGTATACAGAAGATGTCTATGATCAGGTTGGATTAGC-----TC 126236 |||| |||||||| || || || | ||||| |||| || ||||| || || Sbjct 230564 TACGCGAATGAATTAGATTACACGAATGATGTGTATGCTCCACTTGGAAAAGACATGATC 230623 Query 126237 CA-GATGTAAAGAAATTCATCAGATACAACGCAAATAAAGCTTTAAACAATCTGGGCTTT 126295 | || ||||| || ||| | | || |||||||||||||| | | ||| | || | Sbjct 230624 GAAGAAGTAAATAAGTTCCTACGTTATAACGCAAATAAAGCAATGATGAATTTAGGATAC 230683 Query 126296 GATCATTGGTTTGAAGAAGAGGATGTTAATCCAATTGTTATCAATGGTTTGAACACTAAG 126355 || || | ||||| || ||| |||| |||||||| ||| ||||| | | || || Sbjct 230684 GACCAATACTTTGATGATGAGTATGTAAATCCAATCGTTCAAAATGGACTACAAACAAAA 230743 Query 126356 ACTAAATCCCATGACTTCTTTTCAACTAAAGGGAATGGATACAAAAAAGC 126405 || ||| ||||| ||||| || |||||| |||||||| |||||| Sbjct 230744 ACGAAACAACATGATTTCTTCTCTGTTAAAGGAAATGGATATGTAAAAGC 230793 >seq217940 Length=44029 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 130027 CGAACTAAACGTTTAGTGATTTCTCCACCAACTGAACCGTTTGCACGAGATGTAGTCTCA 130086 |||||||||||||| || || |||||||| |||||||| ||||| || ||||| | || Sbjct 7099 CGAACTAAACGTTTCGTAATCTCTCCACCTACTGAACCATTTGCTCGTGATGTTGAATCT 7040 Query 130087 GCGCCTAATTGAACACCAAACTCAGAAGCTATTTCAAGTTTCATTTGTTCAATAGC 130142 | || | | |||||||||||| ||| |||||| |||||||| ||||| || Sbjct 7039 GGTCCAAGTGTAACACCAAACTCCTGAGCAATTTCATACTTCATTTGCTCAATTGC 6984 >seq10519 Length=37031 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 60844 TTGACTGCGTCTTTAAGTGCTTTTGCTGGCTTAAATGCAGGTGCTTTTGTAGCCGGAATA 60903 ||||| || ||||| | |||||| |||| || || |||||| |||| | || || || Sbjct 6993 TTGACAGCATCTTTCAATGCTTTACCTGGTTTGAAAGCAGGTACTTTGCTTGCTGGGATT 7052 Query 60904 TCAATTTCCTCTCCTGTCTGGGGATTTCTCCCTTTACGAGCTGCGCGTTCACGAACTTCA 60963 || || || ||| ||| | || || | ||||||||||||||||||||||| ||||| Sbjct 7053 TCGATATCTTCTTTTGTACGTGGGTTGCGACCTTTACGAGCTGCGCGTTCACGGACTTCG 7112 Query 60964 AATGTTCCGAAACCAGGAATACTT--ACTTTTTCTCCA 60999 || | || || ||| | | || |||||||||||| Sbjct 7113 AAGTTACCAAAGCCA--ATCAATTGGACTTTTTCTCCA 7148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428605937418716