Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq214945 96.9 3e-15 seq54724 95.1 1e-14 seq26661 91.5 1e-13 seq253709 86.0 5e-12 seq210337 86.0 5e-12 seq117562 82.4 6e-11 >seq214945 Length=15579 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 25131 AAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT 25190 |||||||| || || ||| ||||||||||| |||||||| || ||||| | |||||| Sbjct 3602 AAAGAAGGAGTCCCTTCAGACCAACAAAGACTGATCTTTGCCGGTAAACAGCTCGAAGAT 3543 Query 25191 TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGA 25250 | ||| | || |||||||| || ||||||||||| ||||| ||| |||| | | Sbjct 3542 GGCCGTACTTTAGCTGATTACAACATCCAAAAGGAATCAACTCTCCACTTGGTTCTCAGG 3483 Query 25251 TTACGAGGAGG 25261 ||| ||||||| Sbjct 3482 TTAAGAGGAGG 3472 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || | || ||||| ||||| || ||| ||| | | Sbjct 7989 ATGCAAATCTTCGTAAAGACTCTTACAGGCAAGACCATATCCCTCGAGGTCGAAAGCTCG 7930 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || || | | ||||| || || || |||||||| || || || || Sbjct 7929 GACACCGTAGAAAACGTCAAGGCCAAGATCCAAGAGAAAGAAGGAGTCCCTTCTGACAAA 7870 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| || |||||||| || ||||| | || || | ||| |||||||||||||| Sbjct 7869 CAAAGCCTGATCTTTGCCGGTAAACAGCTCGAGGACGGCCGTACTTTGGCCGATTACAAT 7810 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || ||||||||||| || |||||| | ||||| || | || || ||| Sbjct 7809 ATCCAAAAGGAATCAACACTTCACCTTGTGTTGCGTCTTCGTGGTGGG 7762 >seq54724 Length=7877 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || ||||| || |||||||||||| ||| || | || Sbjct 1875 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACCATTACCCTCGAGGTTGAGAGCTCA 1934 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | || || || || ||||||||| | || || || Sbjct 1935 GACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCAG 1994 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | |||||||| || || ||| | || || || |||| ||||||| |||||| Sbjct 1995 CAGAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAAT 2054 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| || || |||||||||||| ||||||| || Sbjct 2055 ATTCAGAAAGAGTCTACTCTTCACTTGGTGTTGCG 2089 >seq26661 Length=2801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| | || || || || || ||| ||| |||| | Sbjct 946 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGTTCT 1005 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | | ||| ||| || || || |||||| | || ||||| Sbjct 1006 GACACGATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 1065 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || || |||||||||||| | || |||| |||||||| Sbjct 1066 CAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCCGTACCTTGGCGGATTACAAC 1125 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || ||||||||||| || |||||| ||||| || Sbjct 1126 ATCCAAAAGGAATCAACGCTTCACTTGGTGCTA 1158 >seq253709 Length=6257 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||| || || ||| ||||||||||| |||||||| || ||||| | ||| Sbjct 5233 GAGAAAGAAGAAGTCCCTTCAGACCAACAAAGACTGATCTTTGCCGGTAAACAGCTCGAA 5292 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | || |||||||| ||||||| |||||| ||||| ||| |||| | Sbjct 5293 GATGGTCGTACTTTAGCTGATTACAACATTCAAATGGAATCAACTCTCCACTTGGTTCTC 5352 Query 25248 CGATTACGAGGA 25259 | ||| ||||| Sbjct 5353 AGGTTAAGAGGA 5364 >seq210337 Length=1863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || | || || ||||||||||| || ||| | || Sbjct 812 ATGCAGATTTTCGTGAAGACCCTTACCGGTAAAACCATTACTCTTGAGGTGGAGAGCTCA 753 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || | ||| || || || || |||||| | || ||||| Sbjct 752 GACACGATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCAG 693 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||||||||| || || || || | || ||| ||| ||||||||||||| Sbjct 692 CAAAGACTTATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGGACTTTGGCCGATTACAAC 633 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||| || || |||||| | ||||| || | || ||||| Sbjct 632 ATTCAGAAGGAGTCAACCCTTCACCTTGTGTTGCGTCTTCGTGGAGG 586 >seq117562 Length=2070 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || ||||| || || ||||||||| |||| ||| | || Sbjct 1231 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAAGTCGAAAGCTCA 1290 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | |||| || || || || |||||| | || ||||| Sbjct 1291 GATACTATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 1350 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||||||||| || || || || | ||||| | ||| |||| |||||||| Sbjct 1351 CAAAGACTTATCTTCGCCGGTAAGCAGCTTGAAGACGGAAGGACTCTGGCGGATTACAAC 1410 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || || ||||| ||||| || || Sbjct 1411 ATCCAGAAGGAGTCTACACTCCA 1433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409458900036392