Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq70799 145 1e-29 seq204555 134 2e-26 seq50902 131 3e-25 seq210337 113 7e-20 seq78792 105 1e-17 seq265878 104 4e-17 seq185166 104 4e-17 seq153189 102 1e-16 seq224638 100 4e-16 seq209069 95.1 2e-14 seq236154 89.7 8e-13 seq54724 89.7 8e-13 seq26661 89.7 8e-13 seq29830 86.0 9e-12 >seq70799 Length=497 Score = 145 bits (160), Expect = 1e-29 Identities = 198/281 (70%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 202778 CATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTA 202837 ||||||||||| ||||||| |||||||| ||||| ||| ||||||| |||| | | Sbjct 35 CATCCTTCATAGTTCATATACCTAATTTTTCCAAAAATTTCTCTTTCTCTCCACCCCTGA 94 Query 202838 TCATGAATACCACAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCT 202897 |||||||||||||| ||||||||||||||||||||| | ||| |||| || || || || Sbjct 95 TCATGAATACCACATATTGACCACATACATCCAACAAAACCACTTGGGTCGCGACCGTCC 154 Query 202898 ATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTC 202957 || ||| || ||||| | || | |||| ||||| | | ||| Sbjct 155 ATGCTATACTTGTCATTGAGATAAATGGCATCGGCCAGTGCTCTATCTGGAGTATCAGTC 214 Query 202958 CATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATA 203017 ||||| | ||| ||||||||||| ||||| | | | || ||||| || || | | Sbjct 215 CATTCCAGTATCTTTTTAGCCCAGTACATGCGAAGGAAACCGTGCATCTTGCCTTCCTTT 274 Query 203018 ATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGT 203058 | || ||| |||||| | |||||| | || ||||| || Sbjct 275 ACCAACTGTATTTGTGCAGAATTCCACAGATCATCATGTGT 315 >seq204555 Length=10983 Score = 134 bits (148), Expect = 2e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| ||||| | ||||| || || || ||||| |||||| | || |||| ||| | Sbjct 1490 ATGCAGATATTCGTTAAGACCCTTACCGGTAAAACCATAACTTTGGAAGTTGAGAGCTCA 1431 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| |||| || ||||||||||||||||| || ||||| || || Sbjct 1430 -GACACGATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCGGACCA 1372 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || |||||| | || ||| |||| ||||||| || || || Sbjct 1371 GCAGAGGCTAATCTTTGCGGGGAAACAACTCGAAGATGGTCGGACATTAGCGGACTACAA 1312 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| ||||| |||||| | || | ||| | ||| | || ||||| Sbjct 1311 CATTCAGAAAGAGTCAACTCTTCACCTTGTTCTCCGTCTCCGTGGTGG 1264 >seq50902 Length=6384 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | ||||| | || || ||||| || ||| | ||| | ||| Sbjct 4356 ATGCAGATATTCGTCAAGACTTTGACGGGTAAAACCATCACTCTTGAGGTCGAAAGCTCG 4415 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| ||| ||||||||||||||||| || || || || ||| Sbjct 4416 GATACAATTGACAATGTGAAAACGAAGATTCAAGATAAAGAAGGGATCCCTCCGGACCAA 4475 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| |||||||| | || ||| |||| ||||||| || || || Sbjct 4476 CAGAGGCTAATCTTTGCGGGAAAACAGCTCGAAGATGGTCGGACATTAGCGGACTACAAC 4535 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| ||||| || ||| | || | ||| | ||| | || ||||| Sbjct 4536 ATTCAGAAAGAGTCCACTCTTCACCTTGTTCTCCGTCTCCGTGGTGG 4582 >seq210337 Length=1863 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || || || ||||| || ||| | ||| |||| ||| Sbjct 1268 ATGCAAATCTTTGTCAAGACTCTCACTGGGAAAACCATTACTCTTGAGGTTGAGAGCTCC 1209 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || |||| | || || || || || ||||||||||| || || ||||| Sbjct 1208 -GATACGATCGATAATGTCAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCA 1150 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || ||||| ||||| || || ||| | || ||| | || || | | ||||| || Sbjct 1149 GCAGAGACTTATCTTTGCCGGTAAGCAACTTGAAGATGGACGTACTCTTGCGGATTACAA 1090 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || ||| | || ||||| | ||| | |||||||||| Sbjct 1089 CATCCAAAAAGAGTCCACTCTACACTTGGTACTTCGTCTCAGAGGTGGTAT 1039 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||||||||| | || || || || || || || |||||| | ||| | || ||| Sbjct 1724 ATGCAAATATTCGTGAAAACGCTTACTGGAAAGACCATAACTCTCGAGGTCGAGAGC-TC 1666 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || || | || || || || || || ||||| || || || ||||| Sbjct 1665 TGACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCA 1606 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || || |||||| |||| ||| | || || || | || ||||| Sbjct 1605 GCAACGATTGATCTTCGCCGGTAAACAACTAGAAGATGGCCGTACCTTGGCTGACTATAA 1546 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || ||||| |||||| | || || |||||||||| Sbjct 1545 CATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGGTAT 1495 >seq78792 Length=14290 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || ||||| || || || ||||| ||||| ||||| | Sbjct 11442 AATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCTTC 11501 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | ||| ||| || ||||| || ||||| || ||||| || || Sbjct 11502 GGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATTCCACCGGACCA 11561 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || ||||| ||||||||||| || || | ||||| | | ||||| || Sbjct 11562 GCAACGTTTGATCTTTGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTACAA 11621 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || || ||||| || | ||||| ||| | || ||| |||| || Sbjct 11622 CATCCAGAAGGAATCGACGCTTCATTTAGTTCTGCGATTAAGAGGAGG 11669 >seq265878 Length=14687 Score = 104 bits (114), Expect = 4e-17 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 ||||| || || ||||| || ||||||||||||||||| || | || ||||| || || Sbjct 5314 GAAAA--CAGGACAAAGAGGGAATACCACCTGATCAACAGAGATTGATCTTTGCTGGTAA 5371 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 |||| |||| ||| | |||||||| | ||||| ||||| || ||||| || ||| | || Sbjct 5372 ACAACTAGAAGATGGCCGAACATTGGCGGATTACAATATCCAGAAAGAGTCGACTCTTCA 5431 Query 124742 TTTGGTTTT 124750 |||||| || Sbjct 5432 TTTGGTCTT 5440 >seq185166 Length=13725 Score = 104 bits (114), Expect = 4e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||| || ||||||||||||||||| || | || ||||| || |||||| || Sbjct 3655 CAGGACAAAGAGGGAATACCACCTGATCAACAGAGATTGATCTTTGCTGGTAAACAACTA 3714 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| |||||||||||| ||||| || || || ||||| || ||| | || ||||| Sbjct 3715 GAAGATGGTCGAACATTAGCGGATTACAACATCCAGAAAGAGTCGACTCTTCACTTGGTC 3774 Query 124749 TT 124750 || Sbjct 3775 TT 3776 >seq153189 Length=17048 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || || || ||||| || ||||| || || || | || || || || || ||| Sbjct 14593 AAGATCCAGGACAAGGAAGGGATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGTAAA 14652 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| |||| ||| | | ||||| || |||||||| || ||||||||||| Sbjct 14653 CAGCTCGAGGATGGTCGCACACTTGCGGATTACAACATTCAAAAGGAGTCAACTTTGCAC 14712 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||| | || |||||||| Sbjct 14713 TTGGTGTTACGTCTCCGTGGTGGTAT 14738 Score = 100 bits (110), Expect = 4e-16 Identities = 117/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || || || ||||| || ||||| || || || | || || || || || ||| Sbjct 14821 AAGATCCAGGACAAGGAAGGGATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGTAAA 14880 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| |||| ||| | | ||||| || |||||||| || ||||||||||| Sbjct 14881 CAGCTCGAGGATGGTCGCACACTTGCGGATTACAACATTCAAAAGGAGTCAACTTTGCAC 14940 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTCA 124778 ||||| |||||| | || |||||| | |||| | ||| Sbjct 14941 TTGGTGTTACGTCTCCGTGGTGGTTTCTAAATACTCA 14977 >seq224638 Length=5969 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || ||| ||||||||||||||| | || || || || || Sbjct 3489 GATACGATTGACAATGTGAAGGCGAAGATTCAAGATAAAGAAAGGATCCCTCCGGACCAG 3430 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| |||||||| | || ||| |||| ||||||| ||||| || Sbjct 3429 CAGAGGCTAATCTTTGCGGGAAAACAGCTCGAAGATGGTCGGACATTAGCGGATTACAAC 3370 Query 124719 ATTCAAAAAGAATCAACT 124736 ||||| ||||| |||||| Sbjct 3369 ATTCAGAAAGAGTCAACT 3352 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 124662 AGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATT 124721 ||||| || ||||| || || | | |||||| ||||||| | | ||||||||| ||| Sbjct 4323 AGGCTGATCTTTGCCGGTAAGTAGCTCGAGGATGGTCGAACCCTCGCAGATTATAACATT 4264 Query 124722 CAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||||||||||| ||||||| |||||||||| Sbjct 4263 CAGAAGGAATCAACCTTGCATTTGGTGCTACGTTTGAGAGGTGGTAT 4217 >seq209069 Length=2205 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || |||||||||||||||||||||||||||||||| || ||||| | || ||| | Sbjct 1825 CAGGACAAAGAAGGTATACCACCTGATCAACAAAGGCTGATCTTTGCTTGTAAGCAACTT 1766 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| || ||| |||| ||||| || || || ||||| || ||| | ||| | || Sbjct 1765 GAAGATGGTACAACCTTAGCGGATTACAACATCCACAAAGAGTCCACTCTTCATCTTGTC 1706 Query 124749 TT 124750 || Sbjct 1705 TT 1704 >seq236154 Length=204 Score = 89.7 bits (98), Expect = 8e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| ||||||||||| ||||| || |||||| | | || ||||| ||||| Sbjct 177 AAGATCCAAGACAAAGAAGGTATCCCACCAGACCAACAACGTTTGATCTTTGCCGGAAAG 118 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || || | || ||| | || || || || || || ||||| ||| | || Sbjct 117 CAACTTGAAGACGGACGCACACTTTCCGACTACAACATCCAGAAGGAATCTACTCTTCAC 58 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || ||| | ||||||||||| ||| || Sbjct 57 TTGGTGTTGCGTCTCCGAGGTGGTATGCAAATTT 24 >seq54724 Length=7877 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || || ||||| || || | ||| |||| ||| | Sbjct 1875 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACCATTACCCTCGAGGTTGAGAGCTCA 1934 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || || | ||| || || || || ||||||||||| || || || || Sbjct 1935 -GACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCA 1993 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || ||||| ||||| ||| | ||||| | |||| | | || || || Sbjct 1994 GCAGAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAA 2053 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| ||||| || ||| | || ||||| || ||| | || |||||||| Sbjct 2054 TATTCAGAAAGAGTCTACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGTAT 2104 >seq26661 Length=2801 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | ||||| | || || || ||||| || | ||| | || ||| | Sbjct 1858 ATGCAAATCTTCGTGAAGACCTTGACTGGTAAGACTATTACCCTTGAGGTGGAGAGCTCA 1917 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || || | ||| || ||||| || ||||||||||| || || || || Sbjct 1918 -GACACCATCGACAACGTGAAAGCTAAGATTCAGGACAAAGAAGGTATTCCTCCGGACCA 1976 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || || || || || | |||||| | || ||| | | || ||||| Sbjct 1977 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGTACACTGGCCGACTATAA 2036 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| ||| |||| ||||| || ||| | || |||||||| Sbjct 2037 CATTCAGAAGGAATCTACTCTGCACTTGGTCTTGCGTCTCCGTGGTGGTAT 2087 >seq29830 Length=9971 Score = 86.0 bits (94), Expect = 9e-12 Identities = 172/249 (69%), Gaps = 11/249 (4%) Strand=Plus/Minus Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542 |||| ||||||||||| || | ||||||||| ||||| | |||||||||||||||| | Sbjct 1232 GCAATGTTAAATGGTACGCCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAA 1173 Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCAT 205601 || | | ||| | |||| ||| ||| |||||| || || || || | |||| Sbjct 1172 AGTTCTCCATTCGCA---ACATAAAACTGT-GAAAACATGTGGCATGGAGGAAGTGCCAT 1117 Query 205602 ATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTC-TAGAT--TCAGGttt 205658 || || ||| ||||||||| || | | |||||| | | | ||| ||||| || Sbjct 1116 CAGTTTAAGATCAGAAGGATTCCAAGCCG---ACATTATAATCCGTCGATCATCAGGATT 1060 Query 205659 attttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGT 205718 || || || || || | | || | | |||||||||||||| ||||||| | Sbjct 1059 GTTCTTGATCTTGTTAAATACATCTAAGAGCTGATCAAATCCTTGGCCAGTATAATCAGC 1000 Query 205719 ATCCATATC 205727 || |||||| Sbjct 999 ATGCATATC 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752932512550400