Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_002072.2 Length=34815 Score E Sequences producing significant alignments: (Bits) Value seq114485 190 5e-44 seq219614 116 8e-22 seq57530 102 2e-17 >seq114485 Length=730 Score = 190 bits (210), Expect = 5e-44 Identities = 485/718 (68%), Gaps = 29/718 (4%) Strand=Plus/Plus Query 1803 GCTATTTTTGATGAAATTGGAGAAATTGAAACAAGGGATGCGGTTTCTAAGATTGTTTCT 1862 ||||||||||||||||| |||||| | |||| | ||| | | || || || | || Sbjct 3 GCTATTTTTGATGAAATCGGAGAAGTCGAAAGCCGCGATAAGATATCAAAAATCATATCC 62 Query 1863 GGGCAAGTAAAGGTGCCCAATAGGCAATTCATTCAAATCTCCACTGCCTACCCAAACCCA 1922 || ||||| || || || ||||||| |||| || || || || || || || || Sbjct 63 GGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAAACCG 122 Query 1923 TCAGTTCCTTTCAGGGAAGACCAAAAGATTTTGCAGCAAGCCATGGAAGATGACGATAAT 1982 ||||||||| |||||||| ||||| | |||||||||||||| | || | || Sbjct 123 GGTGTTCCTTTCCATGAAGACCAGAAGATGATTCAGCAAGCCATGGAGCAAGATTACAAG 182 Query 1983 CGTGACGCCGATACGTATCTTTG--CTTAGTTTGGTCGCAAGATA-ACTTAGACGAGGTC 2039 || ||||| |||||||| ||| | |||| ||||| ||||||| | |||| | ||| Sbjct 183 CGAGACGCTGATACGTA-CTTAGGACTTA-TTTGGGCGCAAGACAGTCTTA-ATGAGACG 239 Query 2040 TTCCAACCAGAAACATGGGCAAAGAGCAATCCACTGCTAGACTTG-GAGAGCGAACGTGA 2098 ||| | || ||||| |||| ||||| |||||||| | |||||| || | || || Sbjct 240 TTCAAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCAAA---GA 296 Query 2099 GAA--CCTTATGAAAGGGTTAATGGACAAGCGAGATAGCGACCTGCTAAGTGGTAACCTC 2156 ||| | ||| |||| || |||||||||| ||||| ||| ||||| || | Sbjct 297 GAAGTGTTAATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACAATATT 356 Query 2157 GCAGACTTCCAAGTTAAAAACATGAACTGCTGGCTACTTG-CTGA-CAGTAACAGCTTTC 2214 | |||||| ||| || ||| |||| ||||| | | | | ||| | || || | Sbjct 357 GGAGACTTTCAAAACAAGAACCTGAATATGTGGCTGCAAGAATCATCAG--ATAG-TTAC 413 Query 2215 TTG-ATTTGAAAGATATCGAAAATGCAGTTATTCCTGAGTTTGACATACGTGGTAAGCGA 2273 ||| | | || || || ||| |||||||| ||||| || |||| | || Sbjct 414 TTGAAACTAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGT-CGTGA 472 Query 2274 -GTTTATGTAGGATTGGATGCATCAATGTTCAGCGATAATACAGCCATTGGCTTCGTCTA 2332 |||||| | || || || || |||||||||||||| || || ||| || || | Sbjct 473 TGTTTATATCGGTTTTGACTATTCGATGTTCAGCGATAACACTGCGCTTGCTTTTGTTTT 532 Query 2333 TCCATACGTTGGTGAAGATGGAAGTCAAAAATGGCATATCGAACAGCACAGTTTTATCCC 2392 |||||| | | | ||||| | || | ||| | || | || || ||||| || Sbjct 533 TCCATATGAAGATAGCGATGGGA---AACACTGGTACATTGCTCAACATTCGTTTATTCC 589 Query 2393 ATGGCAACAAGCGGGCTCGTTAGAAGCCAAAATGGAA---CAAGACGGTGTTAATTACCG 2449 |||||| |||| || || | |||||||| |||| |||||||| || ||||| Sbjct 590 TTGGCAAAAAGCTGGATCAATTGAAGCCAA---GGAAAAGCAAGACGGCATTGCCTACCG 646 Query 2450 TGATCTAGAACAGAAAGGCTACTGTACCATCACAAGCCACCCACAAGGGCTTATCAAT 2507 || || | | | |||| | || || ||||| ||||| || |||||| |||||||| Sbjct 647 AGAGCTGGCAAAAGAAGGTTTTTGCACAATCACTAGCCATCCGCAAGGGATTATCAAT 704 >seq219614 Length=1033 Score = 116 bits (128), Expect = 8e-22 Identities = 210/308 (68%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 1358 ATCTGCCCAAACGTAGACACTGGTGAACCTACACAGTTGATGCCGTGGCAGAAATTTATT 1417 || ||||| | || || || || || ||||| || | ||||| |||||| ||||| Sbjct 460 ATTTGCCCGGATGTCGATACCGGAGAGCCTACCAAGCTCATGCCTTGGCAGGCTTTTATA 401 Query 1418 TTGTGTATGCTTTTTGGGTGGAGAAATGCAAACGGTGGTAAACGTTTCAGCCGTGCCATT 1477 |||| | ||| | || ||| | ||| | ||||||||||||| || || ||||| ||| Sbjct 400 TTGTCTCAACTTATAGGCTGGCGTAATCAAGACGGTGGTAAACGGTTTAGTCGTGCAATT 341 Query 1478 GTTTCAGTCGGTCGAGGTCAAGGTAAGACATACTTGATGGCTATTCTTACGGCGTATTCG 1537 ||| || | || |||||||| ||||| ||| ||||| | || || || || || Sbjct 340 GTTAGTGTTGCACGTGGTCAAGGCAAGACGTACATGATGTCAATCATTGCGTGTTACTCA 281 Query 1538 TATTTTATTGAAAGCCTCGGACTTTCCAATCAGGACTATTTGGTTACATCAATCAACTTC 1597 ||||| ||||| || ||| | || || || || | || || |||| || || | | Sbjct 280 TATTTAGTTGAATCGCTGGGATTGTCTAACCAAGATTTCTTAGTAGCATCGATTAATTAC 221 Query 1598 AAACAAANNNACAAGTTGCTTGGTTACATCAAATCAATGATGAAGCAAATAATCCAAAAC 1657 || |||| || | ||| ||||||||| ||||||||| | || || || Sbjct 220 AAGCAAACCGGGAAAATATATGGGTACATCAAAGGAATGATGAAAAAGATCATTGCTAAT 161 Query 1658 GAACCTTT 1665 |||||||| Sbjct 160 GAACCTTT 153 >seq57530 Length=397 Score = 102 bits (112), Expect = 2e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6017 ACATTGTTTGACCGTCAACAAATGTCATTGCTATCTACCAATATTGGTGGTGGTGCGTTT 6076 ||| |||||||||||||||| ||| ||| | ||||| ||||||| |||||||||| Sbjct 276 ACACTGTTTGACCGTCAACAGATGAGCTTGGTTGTCACCAACATTGGTGCTGGTGCGTTT 217 Query 6077 GAAACTGACACTACTAAAGTACGTGTTATTGACCGTTTTGATGTAGTAGCAACTGATACA 6136 || ||| ||||| | ||||| || ||||| || ||||| |||||||||| | Sbjct 216 GAGCATGATCAGACTAAGCTGCGTGTCATCGACCGCTTCGATGTGCAAGCAACTGATGCT 157 Query 6137 GAAGCATTTGTGCCAGCATCATTTAAAGCTATTGCTGACCA 6177 || || |||||| | | ||| || || ||||||||||| Sbjct 156 GATGCCTTTGTGGCTGGATCGTTCTCCGCAATTGCTGACCA 116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110933251250072