Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_002185.1 Length=35466 Score E Sequences producing significant alignments: (Bits) Value seq57530 87.8 4e-13 seq114485 82.4 2e-11 >seq57530 Length=397 Score = 87.8 bits (96), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 16759 TGTTTGACCGTCAACAAATGTCATTGCTATCTACCAATATCGGTGGTGGTGCGTTTGAAA 16818 |||||||||||||||| ||| ||| | ||||| || |||| |||||||||||| Sbjct 272 TGTTTGACCGTCAACAGATGAGCTTGGTTGTCACCAACATTGGTGCTGGTGCGTTTGAGC 213 Query 16819 CTGACACTACAAAAATTCGTGTGATTGACCGTTTTGATGTTGTAGCAACTGATACAGAAT 16878 ||| || || | ||||| || ||||| || ||||| |||||||||| | || Sbjct 212 ATGATCAGACTAAGCTGCGTGTCATCGACCGCTTCGATGTGCAAGCAACTGATGCTGATG 153 Query 16879 CATTTGTGCCAGCATCCTTCAAAGCGATCGCTGACCAAAAAGGCAACCTT 16928 | |||||| | | ||| ||| || || |||||||| || |||| ||| Sbjct 152 CCTTTGTGGCTGGATCGTTCTCCGCAATTGCTGACCAGCAA-GCAAACTT 104 >seq114485 Length=730 Score = 82.4 bits (90), Expect = 2e-11 Identities = 178/266 (67%), Gaps = 3/266 (1%) Strand=Plus/Plus Query 12994 TTATTCCTGAGTTTGATATACGTGGTAAACGTGTCTATGTTGGTCTTGATGCTTCAATGT 13053 |||||||| |||||||| |||| ||| ||| | ||| |||| ||| |||| Sbjct 442 TTATTCCTAGTTTTGATATTGATGGTCGTGATGTTTATATCGGTTTTGACTATTCGATGT 501 Query 13054 TTAGTGATAACACGGCAATCGGTTTTGTTTACCCGTATTTGGGTGAAGACGGCAGTCAAA 13113 | || |||||||| || | | |||||||| || ||| | | || || | || Sbjct 502 TCAGCGATAACACTGCGCTTGCTTTTGTTTTTCCATATGAAGATAGCGATGGGA---AAC 558 Query 13114 AATGGCATGTAGAACAGCATAGCTTTATTCCTTGGCAACAAGCAGGTTCGCTTGAGGCTA 13173 | ||| | | | || ||| ||||||||||||||| |||| || || |||| || | Sbjct 559 ACTGGTACATTGCTCAACATTCGTTTATTCCTTGGCAAAAAGCTGGATCAATTGAAGCCA 618 Query 13174 AGATGGAACAAGATGGTGTCAATTATCGAGATTTAGAAGAAAAAGGCTACTGTACCATCA 13233 || | ||||| || | || ||||| | | | || |||| | || || |||| Sbjct 619 AGGAAAAGCAAGACGGCATTGCCTACCGAGAGCTGGCAAAAGAAGGTTTTTGCACAATCA 678 Query 13234 CAAGCCATCCACAAGGACTTATCAAT 13259 | |||||||| ||||| |||||||| Sbjct 679 CTAGCCATCCGCAAGGGATTATCAAT 704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113009840563808