Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq210337 89.7 8e-13 seq54724 89.7 8e-13 seq78792 87.8 3e-12 >seq210337 Length=1863 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | |||||| |||| ||| || ||||| || || ||||| | | Sbjct 1042 CCACCTCTGAGACGAAGTACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATCCGCA 1101 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||| || || ||||| || | ||| |||||||||||||| Sbjct 1102 AGAGTACGTCCATCTTCAAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 1161 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| || || Sbjct 1162 ATACCTTCTTTGTCCTG 1178 >seq54724 Length=7877 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| |||| ||||| || | || ||||| || || || ||||| | Sbjct 1645 CCACCACGAAGCCTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCC 1586 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || || || ||||| || || |||||||| ||||||||||||||| Sbjct 1585 AAGGTACGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGA 1526 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 1525 ATTCCTTCCTTATCCTG 1509 >seq78792 Length=14290 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146047 CGTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATC 146106 || ||| ||||| | || | || ||||| | || ||||| || || || ||||| Sbjct 11673 CGCTCCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATC 11614 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 | || ||||| | || || ||||||||||| ||||| ||||| | |||||| ||||| Sbjct 11613 GGCGAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGG 11554 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 ||||||||||| || ||||| Sbjct 11553 TGGAATTCCTTCCTTGTCTTG 11533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741042761589760