Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq54724 100 2e-16 seq26661 100 2e-16 seq167623 96.9 2e-15 seq26664 96.9 2e-15 seq66861 91.5 9e-14 seq91578 82.4 5e-11 >seq54724 Length=7877 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | || ||| ||||| |||||||| || | | Sbjct 1645 CCACCACGAAGCCTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCC 1586 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || ||||||||||| || ||||| || | | |||||| || || Sbjct 1585 AAGGTACGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGA 1526 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||| | | | | |||| ||| | ||| || Sbjct 1525 ATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCGATCGTATCAGAACTTTCCACC 1466 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || |||||||||||||||||||||||||||||| Sbjct 1465 TCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 1418 >seq26661 Length=2801 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| ||||||| ||| | || ||| || || |||||||| || | | Sbjct 1172 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCCGCC 1113 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || ||||| ||||| || || || || |||| |||||| || || Sbjct 1112 AAGGTACGGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 1053 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| |||||| ||| | | | | |||| || | ||| || Sbjct 1052 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACC 993 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || ||||||||||||||||| |||||||||||| Sbjct 992 TCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATC 945 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 ||||||||||||||||| || | ||| || | || || | ||| || || || || Sbjct 2276 TCTTTCTGTATGTTGTAATCCGCCAGTGTGCGACCATCCTCGAGCTGTTTACCAGCAAAG 2217 Query 34259 ATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| |||||||||| || ||| | || |||||||| ||||| ||| | || Sbjct 2216 ATGAGACGCTGCTGGTCCGGTGGGATCCCT-TCCTTGTCCTGGATCTTGGCCTTGACATT 2158 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | ||||| |||| ||||| || |||||||| || |||||||| Sbjct 2157 GTCAATTGTGTCAGAACTCTCGACTTCCAGGGTGATAGTCTTGCCGGTTAGGGTTTTCAC 2098 Query 34378 AAAGATCTGCAT 34389 || |||||||| Sbjct 2097 GAATATCTGCAT 2086 >seq167623 Length=7090 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||| |||| || |||| |||| || | || || || ||||| Sbjct 2584 TTCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTCTTCGAGTTGTTTTCCGGCGAA 2525 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||| | |||||||| || || | | |||||||| ||||| ||||| | || Sbjct 2524 AATCAATCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTC-GCTTTGACAT 2466 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | ||||| |||||||| || | || || || || ||||| || ||||||| Sbjct 2465 TGTCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCA 2406 Query 34377 CAAAGATCTGCATCGCTCGA 34396 | |||||||||||| || || Sbjct 2405 CGAAGATCTGCATCTCTTGA 2386 >seq26664 Length=6282 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || ||| |||| || | || || || ||||| Sbjct 5681 TTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTGTTTTCCCGCGAA 5740 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || | ||||||||||| || | | |||||||| ||| || ||||| | || Sbjct 5741 GATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATC-TTCGCTTTGACAT 5799 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | ||||| |||||||| || | || || || || ||||| || ||||||| Sbjct 5800 TGTCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCA 5859 Query 34377 CAAAGATCTGCATCGCTCGA 34396 | |||||||||||| || || Sbjct 5860 CGAAGATCTGCATCTCTTGA 5879 >seq66861 Length=20397 Score = 91.5 bits (100), Expect = 9e-14 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || ||| |||| || | || || || ||||| Sbjct 17451 TTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCAAGTTGTTTTCCGGCGAA 17392 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| | || ||||| || || | | |||||||| ||||| ||| | || Sbjct 17391 AATCAATCGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTGACATT 17332 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| ||||| ||||| || || | ||| || || || || || || |||||||| Sbjct 17331 GTCGATCGTATCGGATGATTCAACCTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCAC 17272 Query 34378 AAAGATCTGCATC 34390 |||||||||||| Sbjct 17271 GAAGATCTGCATC 17259 >seq91578 Length=16840 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || ||| |||| || | || || || ||||| Sbjct 277 TTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTGTTTTCCGGCGAA 336 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| | || || || || || | | |||||||| ||||| ||| | || Sbjct 337 AATCAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATT 396 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| ||| | ||||| || || | ||| || || || || || || |||||||| Sbjct 397 GTCGATCGTATCCGATGATTCAACCTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCAC 456 Query 34378 AAAGATCTGCATC 34390 |||||||||||| Sbjct 457 GAAGATCTGCATC 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322019805783680