Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq54724 100 2e-16
seq26661 100 2e-16
seq167623 96.9 2e-15
seq26664 96.9 2e-15
seq66861 91.5 9e-14
seq91578 82.4 5e-11
>seq54724
Length=7877
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || ||||| || |||| ||| | || ||| ||||| |||||||| || | |
Sbjct 1645 CCACCACGAAGCCTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCC 1586
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| |||| | || ||||||||||| || ||||| || | | |||||| || ||
Sbjct 1585 AAGGTACGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGA 1526
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||| || ||||| ||| | | | | |||| ||| | ||| ||
Sbjct 1525 ATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCGATCGTATCAGAACTTTCCACC 1466
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | ||||| || || ||||||||||||||||||||||||||||||
Sbjct 1465 TCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 1418
>seq26661
Length=2801
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || ||||| ||||||| ||| | || ||| || || |||||||| || | |
Sbjct 1172 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCCGCC 1113
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| |||| | || ||||| ||||| || || || || |||| |||||| || ||
Sbjct 1112 AAGGTACGGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 1053
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||||| |||||| ||| | | | | |||| || | ||| ||
Sbjct 1052 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACC 993
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | ||||| || || ||||||||||||||||| ||||||||||||
Sbjct 992 TCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATC 945
Score = 87.8 bits (96), Expect = 1e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
||||||||||||||||| || | ||| || | || || | ||| || || || ||
Sbjct 2276 TCTTTCTGTATGTTGTAATCCGCCAGTGTGCGACCATCCTCGAGCTGTTTACCAGCAAAG 2217
Query 34259 ATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
||||| |||||||||| || ||| | || |||||||| ||||| ||| | ||
Sbjct 2216 ATGAGACGCTGCTGGTCCGGTGGGATCCCT-TCCTTGTCCTGGATCTTGGCCTTGACATT 2158
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | || | || | ||||| |||| ||||| || |||||||| || ||||||||
Sbjct 2157 GTCAATTGTGTCAGAACTCTCGACTTCCAGGGTGATAGTCTTGCCGGTTAGGGTTTTCAC 2098
Query 34378 AAAGATCTGCAT 34389
|| ||||||||
Sbjct 2097 GAATATCTGCAT 2086
>seq167623
Length=7090
Score = 96.9 bits (106), Expect = 2e-15
Identities = 143/200 (72%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| |||||||| |||| || |||| |||| || | || || || |||||
Sbjct 2584 TTCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTCTTCGAGTTGTTTTCCGGCGAA 2525
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
||| | |||||||| || || | | |||||||| ||||| ||||| | ||
Sbjct 2524 AATCAATCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTC-GCTTTGACAT 2466
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| | || | ||||| |||||||| || | || || || || ||||| || |||||||
Sbjct 2465 TGTCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCA 2406
Query 34377 CAAAGATCTGCATCGCTCGA 34396
| |||||||||||| || ||
Sbjct 2405 CGAAGATCTGCATCTCTTGA 2386
>seq26664
Length=6282
Score = 96.9 bits (106), Expect = 2e-15
Identities = 143/200 (72%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| ||||||||||||| || ||| |||| || | || || || |||||
Sbjct 5681 TTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTGTTTTCCCGCGAA 5740
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
|| | ||||||||||| || | | |||||||| ||| || ||||| | ||
Sbjct 5741 GATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATC-TTCGCTTTGACAT 5799
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| | || | ||||| |||||||| || | || || || || ||||| || |||||||
Sbjct 5800 TGTCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCA 5859
Query 34377 CAAAGATCTGCATCGCTCGA 34396
| |||||||||||| || ||
Sbjct 5860 CGAAGATCTGCATCTCTTGA 5879
>seq66861
Length=20397
Score = 91.5 bits (100), Expect = 9e-14
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| ||||||||||||| || ||| |||| || | || || || |||||
Sbjct 17451 TTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCAAGTTGTTTTCCGGCGAA 17392
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
||| | || ||||| || || | | |||||||| ||||| ||| | ||
Sbjct 17391 AATCAATCGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTGACATT 17332
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | |||| ||||| ||||| || || | ||| || || || || || || ||||||||
Sbjct 17331 GTCGATCGTATCGGATGATTCAACCTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCAC 17272
Query 34378 AAAGATCTGCATC 34390
||||||||||||
Sbjct 17271 GAAGATCTGCATC 17259
>seq91578
Length=16840
Score = 82.4 bits (90), Expect = 5e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| ||||||||||||| || ||| |||| || | || || || |||||
Sbjct 277 TTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTGTTTTCCGGCGAA 336
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
||| | || || || || || | | |||||||| ||||| ||| | ||
Sbjct 337 AATCAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATT 396
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | |||| ||| | ||||| || || | ||| || || || || || || ||||||||
Sbjct 397 GTCGATCGTATCCGATGATTCAACCTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCAC 456
Query 34378 AAAGATCTGCATC 34390
||||||||||||
Sbjct 457 GAAGATCTGCATC 469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322019805783680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |