Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq146431 156 4e-33 seq27195 125 7e-24 >seq146431 Length=15796 Score = 156 bits (172), Expect = 4e-33 Identities = 575/890 (65%), Gaps = 17/890 (2%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || ||| ||||| |||| ||||||||| ||||| ||||| ||||| ||| Sbjct 3822 GACATAACGGAAGCTTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTTTTCCCT 3881 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | | ||||| ||||| ||||||| ||||| | || ||| ||| || | Sbjct 3882 TGAAGCGAAATTAACTCCATCCAATCAAACGGATTAGAAGCACCATACACCTTACCGTAG 3941 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 || | | ||| | |||||||| ||||| || |||||||| |||| || ||| | Sbjct 3942 CCAAGCGCACCCAAAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAATCCACGG 4001 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 ||||| || | || || | || || | ||| | | | || || ||| Sbjct 4002 TTCATCCCAACCAACGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCAATCGCCACC 4061 Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTAACG-GAGGGT--TTAATAAGTGTTTA 16225 || || | || | ||| | || | || ||| | || |||| | || Sbjct 4062 GCATCGCACACAATCGACTTCACT-CGCTCCTC--CGTGAGCTTCGTTCGTAAGAGAGTA 4118 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 | || | |||||| |||||||| || || |||||||| | || || ||||| || Sbjct 4119 TAGATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAG 4178 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || | || ||||| ||||| ||||| |||| ||| || || | || ||| Sbjct 4179 AAGGTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCT 4238 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 || ||||| ||||||||||| || || || || | ||| ||| | | ||| | | Sbjct 4239 GAGAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGAT 4298 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | || ||||| | ||||||| | ||||| | |||||| || | || Sbjct 4299 ---CCATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCG 4355 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 | ||| |||| || || | | |||||| ||||| || |||||||| | || | | Sbjct 4356 ACTGCGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGA 4415 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTAGC 16584 |||||||| || ||||| |||||||| || || || ||||| || || || ||| | || Sbjct 4416 CTATACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCA-CGCGC 4474 Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644 |||||| | |||||| || || || | || | |||||| || ||||| || Sbjct 4475 TTCGGAGACTTGTACATCTGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTC 4534 Query 16645 GCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAA---AtttttttCGTTATCTGAAAG 16701 || || || || || || | |||||| || || | || | ||| | || || Sbjct 4535 AGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGT-TG--AG 4591 Query 16702 TTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 ||| ||||||| |||| ||||| ||| || ||||| | ||||| || || || Sbjct 4592 ATTTTCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGC 4651 Query 16762 AACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 | || || || ||||| | ||| || | | ||| ||| ||||||| Sbjct 4652 TTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACA 4701 >seq27195 Length=13093 Score = 125 bits (138), Expect = 7e-24 Identities = 380/581 (65%), Gaps = 11/581 (2%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||||| ||||| || || || |||||||| | |||||||||||||| || || | Sbjct 9231 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAAC 9172 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| || ||||||||||| | ||| || || | || ||| || ||||| Sbjct 9171 CCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAG 9112 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 |||||||| || || || || || | ||| ||| || | || | | | || Sbjct 9111 ATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGAT---CCATCG 9055 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 |||||| | ||||||| | ||||| | || || || | || ||||| Sbjct 9054 ATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGG 8995 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | || || | | |||||| ||||| || || ||||| | || | ||||||||| Sbjct 8994 AAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATC 8935 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTAGCTTCGGATAT 16593 || ||||| |||||||| || || ||||| || || || |||||| | ||||| || | Sbjct 8934 TCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCTTCAGAGAC 8876 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 |||||| || || || | || | || || ||| ||||| || || || Sbjct 8875 TTGTACATCTGACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGC 8816 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAA---AtttttttCGTTATCTGAAAGTTTTAACCA 16710 || || || || | |||||| || || | || | ||| | || || || ||| Sbjct 8815 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGT-TG--AGATTCTCCCA 8759 Query 16711 GTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTT 16770 |||| |||| ||||| ||| || ||||| | ||||| || || || | || || Sbjct 8758 GTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTT 8699 Query 16771 TTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 || ||||| | ||| || | | ||| ||| ||||||| Sbjct 8698 CTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACA 8658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460967048040800