Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq146431 156 4e-33
seq27195 125 7e-24
>seq146431
Length=15796
Score = 156 bits (172), Expect = 4e-33
Identities = 575/890 (65%), Gaps = 17/890 (2%)
Strand=Plus/Plus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
|||||||| || ||| ||||| |||| ||||||||| ||||| ||||| ||||| |||
Sbjct 3822 GACATAACGGAAGCTTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTTTTCCCT 3881
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048
| | ||||| ||||| ||||||| ||||| | || ||| ||| || |
Sbjct 3882 TGAAGCGAAATTAACTCCATCCAATCAAACGGATTAGAAGCACCATACACCTTACCGTAG 3941
Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108
|| | | ||| | |||||||| ||||| || |||||||| |||| || ||| |
Sbjct 3942 CCAAGCGCACCCAAAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAATCCACGG 4001
Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168
||||| || | || || | || || | ||| | | | || || |||
Sbjct 4002 TTCATCCCAACCAACGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCAATCGCCACC 4061
Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTAACG-GAGGGT--TTAATAAGTGTTTA 16225
|| || | || | ||| | || | || ||| | || |||| | ||
Sbjct 4062 GCATCGCACACAATCGACTTCACT-CGCTCCTC--CGTGAGCTTCGTTCGTAAGAGAGTA 4118
Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285
| || | |||||| |||||||| || || |||||||| | || || ||||| ||
Sbjct 4119 TAGATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAG 4178
Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345
|| || | || ||||| ||||| ||||| |||| ||| || || | || |||
Sbjct 4179 AAGGTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCT 4238
Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405
|| ||||| ||||||||||| || || || || | ||| ||| | | ||| | |
Sbjct 4239 GAGAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGAT 4298
Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465
| || ||||| | ||||||| | ||||| | |||||| || | ||
Sbjct 4299 ---CCATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCG 4355
Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525
| ||| |||| || || | | |||||| ||||| || |||||||| | || | |
Sbjct 4356 ACTGCGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGA 4415
Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTAGC 16584
|||||||| || ||||| |||||||| || || || ||||| || || || ||| | ||
Sbjct 4416 CTATACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCA-CGCGC 4474
Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644
|||||| | |||||| || || || | || | |||||| || ||||| ||
Sbjct 4475 TTCGGAGACTTGTACATCTGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTC 4534
Query 16645 GCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAA---AtttttttCGTTATCTGAAAG 16701
|| || || || || || | |||||| || || | || | ||| | || ||
Sbjct 4535 AGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGT-TG--AG 4591
Query 16702 TTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761
||| ||||||| |||| ||||| ||| || ||||| | ||||| || || ||
Sbjct 4592 ATTTTCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGC 4651
Query 16762 AACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811
| || || || ||||| | ||| || | | ||| ||| |||||||
Sbjct 4652 TTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACA 4701
>seq27195
Length=13093
Score = 125 bits (138), Expect = 7e-24
Identities = 380/581 (65%), Gaps = 11/581 (2%)
Strand=Plus/Minus
Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294
||||| ||||| || || || |||||||| | |||||||||||||| || || |
Sbjct 9231 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAAC 9172
Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354
|| ||||| || ||||||||||| | ||| || || | || ||| || |||||
Sbjct 9171 CCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAG 9112
Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414
|||||||| || || || || || | ||| ||| || | || | | | ||
Sbjct 9111 ATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGAT---CCATCG 9055
Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474
|||||| | ||||||| | ||||| | || || || | || |||||
Sbjct 9054 ATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGG 8995
Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534
|| | || || | | |||||| ||||| || || ||||| | || | |||||||||
Sbjct 8994 AAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATC 8935
Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTAGCTTCGGATAT 16593
|| ||||| |||||||| || || ||||| || || || |||||| | ||||| || |
Sbjct 8934 TCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCTTCAGAGAC 8876
Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653
|||||| || || || | || | || || ||| ||||| || || ||
Sbjct 8875 TTGTACATCTGACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGC 8816
Query 16654 AAAAAACGCAAGTATGTGTTTAATAAA---AtttttttCGTTATCTGAAAGTTTTAACCA 16710
|| || || || | |||||| || || | || | ||| | || || || |||
Sbjct 8815 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGT-TG--AGATTCTCCCA 8759
Query 16711 GTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTT 16770
|||| |||| ||||| ||| || ||||| | ||||| || || || | || ||
Sbjct 8758 GTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTT 8699
Query 16771 TTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811
|| ||||| | ||| || | | ||| ||| |||||||
Sbjct 8698 CTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACA 8658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 460967048040800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |