Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_002667.1 Length=41834 Score E Sequences producing significant alignments: (Bits) Value seq114485 271 2e-68 seq57530 127 5e-25 >seq114485 Length=730 Score = 271 bits (300), Expect = 2e-68 Identities = 504/731 (69%), Gaps = 13/731 (2%) Strand=Plus/Plus Query 18642 GCTATTTTTGATGAAATCGGAGAGGTAACTAATAGAGAAAAAATTTCTAAAATTGTTTCT 18701 ||||||||||||||||||||||| || | | || || || || ||||| | || Sbjct 3 GCTATTTTTGATGAAATCGGAGAAGTCGAAAGCCGCGATAAGATATCAAAAATCATATCC 62 Query 18702 GGGCAAGTTATGGTTGAAAATCATCAGTTTGTACAAATTTCAACTTCCTATCCAGACCCT 18761 || ||||| | || | || | || ||||| || ||||| || | ||||| | || Sbjct 63 GGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAAACCG 122 Query 18762 AGCGTTCCTTTTAGAAAAGACCAAAAAACACTTCAAGAAGCTATGGAAAAAGATTGGGAT 18821 | |||||||| ||||||| || | |||| |||| ||||| |||||| | Sbjct 123 GGTGTTCCTTTCCATGAAGACCAGAAGATGATTCAGCAAGCCATGGAGCAAGATTACAAG 182 Query 18822 AGAGAAGCAGATACTTCTTTGTGTTTGGTATGGGCGCAAGATGATTTATCAGAAACATTC 18881 |||| || ||||| | || | | | ||||||||||| | | || || ||| Sbjct 183 CGAGACGCTGATACGTACTTAGGACTTATTTGGGCGCAAGACAGTCTTAATGAGACGTTC 242 Query 18882 GAGCCAGAAACTTGGGTAAAATCAAACCCTCTTCTTGAATTGGAAGATAAAAAAGATATT 18941 |||| ||||||||||| || || || || | || ||| ||| ||| ||| | Sbjct 243 AAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCAAAGAGAAGTG 302 Query 18942 TTATTAAAAGGATTGATTGACAAACGAAACAGTGACTTGTTA-CAAGGGACACTACATGA 19000 ||| | |||| ||| | ||||| || | |||||| || || ||| | | | | || Sbjct 303 TTAATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACAATATTGGA-GA 361 Query 19001 TTTTCAAACTAAAAACCTTAATATGTGGCTTCAGCAAGA-TGTT--GATAGTTACTTAAA 19057 ||||||| || ||||| ||||||||||| |||||| | | ||||||||||| || Sbjct 362 CTTTCAAAACAAGAACCTGAATATGTGGCT---GCAAGAATCATCAGATAGTTACTTGAA 418 Query 19058 TCTTGCTGATGTTGAAAAAGCTATTATTCCTGAATTTAGCATTCATGGGCAACGCTGTT- 19116 || || || |||| || ||||||||| ||| ||| |||| | | |||| Sbjct 419 ACTAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGTCGT-GATGTTT 477 Query 19117 ATATAGGTATTGACTATTCAATGATGTCAGATAATACAGCGATTGCTTTCGTTTTTCCTT 19176 |||| ||| |||||||||| ||| | ||||| || ||| ||||||| |||||||| | Sbjct 478 ATATCGGTTTTGACTATTCGATGTTCAGCGATAACACTGCGCTTGCTTTTGTTTTTCCAT 537 Query 19177 ATTTAGATGATGAAGGAAAGCCTAAGTGGCATGTTGAACAGCATTCGTTTGTTCCATTCC 19236 || |||| || || || | | ||| | ||| || ||||||||| |||| | | Sbjct 538 ATGAAGATAGCGATGGGAAAC---ACTGGTACATTGCTCAACATTCGTTTATTCCTTGGC 594 Query 19237 AAAGAGCAGGTTCAATTGATGCTAAAGAAAAACAAGATGGTATTAATTATAGAGAACTAG 19296 ||| ||| || |||||||| || || ||||| ||||| || ||| || |||| || | Sbjct 595 AAAAAGCTGGATCAATTGAAGCCAAGGAAAAGCAAGACGGCATTGCCTACCGAGAGCTGG 654 Query 19297 AAAAATATGGTTTTTGTACAGTCACAAGCCACCAACAAGGGCTAATCAATGATGATGAGG 19356 |||| | |||||||| ||| |||| ||||| | |||||| | |||||||||||| ||| Sbjct 655 CAAAAGAAGGTTTTTGCACAATCACTAGCCATCCGCAAGGGATTATCAATGATGATCAGG 714 Query 19357 TCTATGAATGG 19367 | ||| |||| Sbjct 715 TGTATACATGG 725 >seq57530 Length=397 Score = 127 bits (140), Expect = 5e-25 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22959 CAACAGTTTATCCACTTTACTATGGAGATATGTCGCAAGCTATTACATTGTTTGACCGTG 23018 || |||||||||| | || ||||| ||| | || || ||| ||| ||||||||||| Sbjct 320 CACCAGTTTATCCGTTATATTATGGCGATCTTTCTCAGGCTGCCACACTGTTTGACCGTC 261 Query 23019 AAAACATGTCATTACTTCCAACAAATATTGGTGCTGGTGCATTTGAAACTGATACTACTA 23078 || | ||| || || || || |||||||||||||| ||||| |||| |||| Sbjct 260 AACAGATGAGCTTGGTTGTCACCAACATTGGTGCTGGTGCGTTTGAGCATGATCAGACTA 201 Query 23079 AAATTCGTGTAATCGATCGCTTCGATGTTAAAGCTACTGACTCAGAAGCTTTAGTTGCTG 23138 | | ||||| ||||| ||||||||||| |||| ||||| | || || || || |||| Sbjct 200 AGCTGCGTGTCATCGACCGCTTCGATGTGCAAGCAACTGATGCTGATGCCTTTGTGGCTG 141 Query 23139 GTTCATTTTCTGCAATTGCAGACCAAGTAGGTAACTTC 23176 | || || || |||||||| ||||| || |||||| Sbjct 140 GATCGTTCTCCGCAATTGCTGACCAGCAAGCAAACTTC 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133322775663456