Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_002667.1
Length=41834
Score E
Sequences producing significant alignments: (Bits) Value
seq114485 271 2e-68
seq57530 127 5e-25
>seq114485
Length=730
Score = 271 bits (300), Expect = 2e-68
Identities = 504/731 (69%), Gaps = 13/731 (2%)
Strand=Plus/Plus
Query 18642 GCTATTTTTGATGAAATCGGAGAGGTAACTAATAGAGAAAAAATTTCTAAAATTGTTTCT 18701
||||||||||||||||||||||| || | | || || || || ||||| | ||
Sbjct 3 GCTATTTTTGATGAAATCGGAGAAGTCGAAAGCCGCGATAAGATATCAAAAATCATATCC 62
Query 18702 GGGCAAGTTATGGTTGAAAATCATCAGTTTGTACAAATTTCAACTTCCTATCCAGACCCT 18761
|| ||||| | || | || | || ||||| || ||||| || | ||||| | ||
Sbjct 63 GGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAAACCG 122
Query 18762 AGCGTTCCTTTTAGAAAAGACCAAAAAACACTTCAAGAAGCTATGGAAAAAGATTGGGAT 18821
| |||||||| ||||||| || | |||| |||| ||||| |||||| |
Sbjct 123 GGTGTTCCTTTCCATGAAGACCAGAAGATGATTCAGCAAGCCATGGAGCAAGATTACAAG 182
Query 18822 AGAGAAGCAGATACTTCTTTGTGTTTGGTATGGGCGCAAGATGATTTATCAGAAACATTC 18881
|||| || ||||| | || | | | ||||||||||| | | || || |||
Sbjct 183 CGAGACGCTGATACGTACTTAGGACTTATTTGGGCGCAAGACAGTCTTAATGAGACGTTC 242
Query 18882 GAGCCAGAAACTTGGGTAAAATCAAACCCTCTTCTTGAATTGGAAGATAAAAAAGATATT 18941
|||| ||||||||||| || || || || | || ||| ||| ||| ||| |
Sbjct 243 AAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCAAAGAGAAGTG 302
Query 18942 TTATTAAAAGGATTGATTGACAAACGAAACAGTGACTTGTTA-CAAGGGACACTACATGA 19000
||| | |||| ||| | ||||| || | |||||| || || ||| | | | | ||
Sbjct 303 TTAATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACAATATTGGA-GA 361
Query 19001 TTTTCAAACTAAAAACCTTAATATGTGGCTTCAGCAAGA-TGTT--GATAGTTACTTAAA 19057
||||||| || ||||| ||||||||||| |||||| | | ||||||||||| ||
Sbjct 362 CTTTCAAAACAAGAACCTGAATATGTGGCT---GCAAGAATCATCAGATAGTTACTTGAA 418
Query 19058 TCTTGCTGATGTTGAAAAAGCTATTATTCCTGAATTTAGCATTCATGGGCAACGCTGTT- 19116
|| || || |||| || ||||||||| ||| ||| |||| | | ||||
Sbjct 419 ACTAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGTCGT-GATGTTT 477
Query 19117 ATATAGGTATTGACTATTCAATGATGTCAGATAATACAGCGATTGCTTTCGTTTTTCCTT 19176
|||| ||| |||||||||| ||| | ||||| || ||| ||||||| |||||||| |
Sbjct 478 ATATCGGTTTTGACTATTCGATGTTCAGCGATAACACTGCGCTTGCTTTTGTTTTTCCAT 537
Query 19177 ATTTAGATGATGAAGGAAAGCCTAAGTGGCATGTTGAACAGCATTCGTTTGTTCCATTCC 19236
|| |||| || || || | | ||| | ||| || ||||||||| |||| | |
Sbjct 538 ATGAAGATAGCGATGGGAAAC---ACTGGTACATTGCTCAACATTCGTTTATTCCTTGGC 594
Query 19237 AAAGAGCAGGTTCAATTGATGCTAAAGAAAAACAAGATGGTATTAATTATAGAGAACTAG 19296
||| ||| || |||||||| || || ||||| ||||| || ||| || |||| || |
Sbjct 595 AAAAAGCTGGATCAATTGAAGCCAAGGAAAAGCAAGACGGCATTGCCTACCGAGAGCTGG 654
Query 19297 AAAAATATGGTTTTTGTACAGTCACAAGCCACCAACAAGGGCTAATCAATGATGATGAGG 19356
|||| | |||||||| ||| |||| ||||| | |||||| | |||||||||||| |||
Sbjct 655 CAAAAGAAGGTTTTTGCACAATCACTAGCCATCCGCAAGGGATTATCAATGATGATCAGG 714
Query 19357 TCTATGAATGG 19367
| ||| ||||
Sbjct 715 TGTATACATGG 725
>seq57530
Length=397
Score = 127 bits (140), Expect = 5e-25
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 22959 CAACAGTTTATCCACTTTACTATGGAGATATGTCGCAAGCTATTACATTGTTTGACCGTG 23018
|| |||||||||| | || ||||| ||| | || || ||| ||| |||||||||||
Sbjct 320 CACCAGTTTATCCGTTATATTATGGCGATCTTTCTCAGGCTGCCACACTGTTTGACCGTC 261
Query 23019 AAAACATGTCATTACTTCCAACAAATATTGGTGCTGGTGCATTTGAAACTGATACTACTA 23078
|| | ||| || || || || |||||||||||||| ||||| |||| ||||
Sbjct 260 AACAGATGAGCTTGGTTGTCACCAACATTGGTGCTGGTGCGTTTGAGCATGATCAGACTA 201
Query 23079 AAATTCGTGTAATCGATCGCTTCGATGTTAAAGCTACTGACTCAGAAGCTTTAGTTGCTG 23138
| | ||||| ||||| ||||||||||| |||| ||||| | || || || || ||||
Sbjct 200 AGCTGCGTGTCATCGACCGCTTCGATGTGCAAGCAACTGATGCTGATGCCTTTGTGGCTG 141
Query 23139 GTTCATTTTCTGCAATTGCAGACCAAGTAGGTAACTTC 23176
| || || || |||||||| ||||| || ||||||
Sbjct 140 GATCGTTCTCCGCAATTGCTGACCAGCAAGCAAACTTC 103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133322775663456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |