Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_002671.1
Length=15179
Score E
Sequences producing significant alignments: (Bits) Value
seq49233 152 5e-33
seq139237 98.7 1e-16
seq237334 87.8 2e-13
>seq49233
Length=12102
Score = 152 bits (168), Expect = 5e-33
Identities = 144/182 (79%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 14520 ATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATC--ACTT 14577
|||| | | || | ||||||||||||||||||||| ||||| |||||||| ||| || |
Sbjct 255 ATGGAACAAGGTAAAGTAAAATGGTTTAACGCAGAAAAAGGTTTTGGCTTCATCGAACGT 314
Query 14578 CAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAT 14637
||| ||| | || | |||| |||||||||||| |||||| | || || |||||||
Sbjct 315 --GAAAGCGGCGACGACGTTTTCGTTCACTTCTCAGCTATCCAAACAGACGGTTTCAAAT 372
Query 14638 CACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAG 14697
||||||| ||||||||| ||||| ||||| ||||||||||| ||||| || | ||||
Sbjct 373 CACTTGACGAAGGTCAAGAAGTTTCGTTTGAAGTTGAAGAAGGCCAACGCGGACCGCAAG 432
Query 14698 CA 14699
||
Sbjct 433 CA 434
>seq139237
Length=87585
Score = 98.7 bits (108), Expect = 1e-16
Identities = 133/184 (72%), Gaps = 6/184 (3%)
Strand=Plus/Minus
Query 14520 ATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATC---ACT 14576
|||| | | || | |||||||||||| || || || ||||| | ||||| ||| ||
Sbjct 31057 ATGGAACAAGGTAAAGTAAAATGGTTCAATGCTGAAAAAGGTTACGGCTTCATCGAGACA 30998
Query 14577 TCAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAA 14636
|| || | | ||||| | |||| |||||||| || || ||| | || || | ||||
Sbjct 30997 TCGGATGCA---AAAGACGTCTTCGTCCACTTCTCGGCGATTCAAGCAGAAGGTTACAAA 30941
Query 14637 TCACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAA 14696
|||||||| ||||| || |||| ||||| || | | ||||| | ||||||| ||||
Sbjct 30940 TCACTTGAAGAAGGCGAAGAAGTAGAATTCGAAATCGTCGAAGGCGATCGTGGTCCTCAA 30881
Query 14697 GCAG 14700
||||
Sbjct 30880 GCAG 30877
>seq237334
Length=23019
Score = 87.8 bits (96), Expect = 2e-13
Identities = 129/181 (71%), Gaps = 4/181 (2%)
Strand=Plus/Minus
Query 14520 ATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATC--ACTT 14577
|||| ||| || | |||||||||||||| | || ||||| || || || ||| || |
Sbjct 19901 ATGGAAAAAGGTAATGTAAAATGGTTTAATGGCGAAAAAGGCTTCGGATTCATCGAACGT 19842
Query 14578 CAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAT 14637
|||| || | ||| | |||| ||| |||||||| || ||| || || | ||||
Sbjct 19841 --GAAGGTGGAGACGATGTATTCGTTCATTTCTCAGCGATTCAAGGCGAAGGTTACAAAA 19784
Query 14638 CACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAG 14697
| | || ||||||||| ||| |||||| | || ||||||||||||| | |||||
Sbjct 19783 CTTTAGAAGAAGGTCAAGCAGTGACTTTTGATTTAGAGCAAGGTCAACGTGGACCTCAAG 19724
Query 14698 C 14698
|
Sbjct 19723 C 19723
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 48304684444088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |