Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq49233 152 5e-33 seq139237 98.7 1e-16 seq237334 87.8 2e-13 >seq49233 Length=12102 Score = 152 bits (168), Expect = 5e-33 Identities = 144/182 (79%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 14520 ATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATC--ACTT 14577 |||| | | || | ||||||||||||||||||||| ||||| |||||||| ||| || | Sbjct 255 ATGGAACAAGGTAAAGTAAAATGGTTTAACGCAGAAAAAGGTTTTGGCTTCATCGAACGT 314 Query 14578 CAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAT 14637 ||| ||| | || | |||| |||||||||||| |||||| | || || ||||||| Sbjct 315 --GAAAGCGGCGACGACGTTTTCGTTCACTTCTCAGCTATCCAAACAGACGGTTTCAAAT 372 Query 14638 CACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAG 14697 ||||||| ||||||||| ||||| ||||| ||||||||||| ||||| || | |||| Sbjct 373 CACTTGACGAAGGTCAAGAAGTTTCGTTTGAAGTTGAAGAAGGCCAACGCGGACCGCAAG 432 Query 14698 CA 14699 || Sbjct 433 CA 434 >seq139237 Length=87585 Score = 98.7 bits (108), Expect = 1e-16 Identities = 133/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 14520 ATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATC---ACT 14576 |||| | | || | |||||||||||| || || || ||||| | ||||| ||| || Sbjct 31057 ATGGAACAAGGTAAAGTAAAATGGTTCAATGCTGAAAAAGGTTACGGCTTCATCGAGACA 30998 Query 14577 TCAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAA 14636 || || | | ||||| | |||| |||||||| || || ||| | || || | |||| Sbjct 30997 TCGGATGCA---AAAGACGTCTTCGTCCACTTCTCGGCGATTCAAGCAGAAGGTTACAAA 30941 Query 14637 TCACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAA 14696 |||||||| ||||| || |||| ||||| || | | ||||| | ||||||| |||| Sbjct 30940 TCACTTGAAGAAGGCGAAGAAGTAGAATTCGAAATCGTCGAAGGCGATCGTGGTCCTCAA 30881 Query 14697 GCAG 14700 |||| Sbjct 30880 GCAG 30877 >seq237334 Length=23019 Score = 87.8 bits (96), Expect = 2e-13 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 14520 ATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATC--ACTT 14577 |||| ||| || | |||||||||||||| | || ||||| || || || ||| || | Sbjct 19901 ATGGAAAAAGGTAATGTAAAATGGTTTAATGGCGAAAAAGGCTTCGGATTCATCGAACGT 19842 Query 14578 CAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAT 14637 |||| || | ||| | |||| ||| |||||||| || ||| || || | |||| Sbjct 19841 --GAAGGTGGAGACGATGTATTCGTTCATTTCTCAGCGATTCAAGGCGAAGGTTACAAAA 19784 Query 14638 CACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAG 14697 | | || ||||||||| ||| |||||| | || ||||||||||||| | ||||| Sbjct 19783 CTTTAGAAGAAGGTCAAGCAGTGACTTTTGATTTAGAGCAAGGTCAACGTGGACCTCAAG 19724 Query 14698 C 14698 | Sbjct 19723 C 19723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48304684444088