Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_002796.1 Length=40003 Score E Sequences producing significant alignments: (Bits) Value seq114485 279 1e-70 seq57530 118 3e-22 seq13777 80.6 7e-11 >seq114485 Length=730 Score = 279 bits (308), Expect = 1e-70 Identities = 508/732 (69%), Gaps = 15/732 (2%) Strand=Plus/Plus Query 1290 GCTATTTTTGATGAAATCGGAGAGGTAACTAATAGAGAAAAAATTTCTAAAATTGTTTCT 1349 ||||||||||||||||||||||| || | | || || || || ||||| | || Sbjct 3 GCTATTTTTGATGAAATCGGAGAAGTCGAAAGCCGCGATAAGATATCAAAAATCATATCC 62 Query 1350 GGACAAGTTTTGGTTAAAAATCATCAGTTTGTACAAATTTCAACTTCCTATCCAGACCCT 1409 |||||||| || || || | || ||||| || ||||| || | ||||| | || Sbjct 63 GGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAAACCG 122 Query 1410 AGCGTTCCTTTT-AGGAAGGACCAAAAAACACTTCAAGAAGCTATGGAGAAAGATTGGGA 1468 | |||||||| | |||| |||| || | |||| |||| |||||| |||||| | Sbjct 123 GGTGTTCCTTTCCATGAAG-ACCAGAAGATGATTCAGCAAGCCATGGAGCAAGATTACAA 181 Query 1469 TAGAGAAGCAGATACTTCTTTGTGTTTGGTATGGGCGCAAGATGATTTATCAGAAACATT 1528 |||| || ||||| | || | | | ||||||||||| | | || || || Sbjct 182 GCGAGACGCTGATACGTACTTAGGACTTATTTGGGCGCAAGACAGTCTTAATGAGACGTT 241 Query 1529 CGAGCCAGAAACTTGGGTAAAATCAAACCCTCTTCTTGAATTGGAAGATAAAAAAGATAT 1588 | |||| ||||||||||| || || || || | || ||| ||| ||| ||| | Sbjct 242 CAAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCAAAGAGAAGT 301 Query 1589 TTTATTAAAAGGATTGATTGACAAACGAAACAGTGACTTGTTA-CAAGGGACACTACATG 1647 ||| | |||| ||| | ||||| || | |||||| || || ||| | | | | | Sbjct 302 GTTAATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACAATATTGGA-G 360 Query 1648 ATTTTCAAACTAAAAACCTTAATATGTGGCTTCAGCAAGA-TGTT--GATAGTTACTTAA 1704 | ||||||| || ||||| ||||||||||| |||||| | | ||||||||||| | Sbjct 361 ACTTTCAAAACAAGAACCTGAATATGTGGCT---GCAAGAATCATCAGATAGTTACTTGA 417 Query 1705 ATCTTGCTGATGTTGAAAAAGCTATTATTCCTGAATTTAGCATTCATGGGCAACGCTGTT 1764 | || || || |||| || ||||||||| ||| ||| |||| | | |||| Sbjct 418 AACTAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGTCGT-GATGTT 476 Query 1765 -ATATAGGTATTGACTATTCAATGATGTCAGATAATACAGCGATTGCTTTCGTTTTTCCT 1823 |||| ||| |||||||||| ||| | ||||| || ||| ||||||| |||||||| Sbjct 477 TATATCGGTTTTGACTATTCGATGTTCAGCGATAACACTGCGCTTGCTTTTGTTTTTCCA 536 Query 1824 TATTTAGATGATGAAGGAAAGCCTAAGTGGCATGTTGAACAGCATTCGTTTGTTCCATTC 1883 ||| |||| || || || | | ||| | ||| || ||||||||| |||| | Sbjct 537 TATGAAGATAGCGATGGGAAAC---ACTGGTACATTGCTCAACATTCGTTTATTCCTTGG 593 Query 1884 CAAAGAGCAGGTTCAATTGATGCTAAAGAAAAACAAGATGGTATTAATTATAGAGAACTA 1943 |||| ||| || |||||||| || || ||||| ||||| || ||| || |||| || Sbjct 594 CAAAAAGCTGGATCAATTGAAGCCAAGGAAAAGCAAGACGGCATTGCCTACCGAGAGCTG 653 Query 1944 GAAAAATATGGTTTTTGTACAGTCACAAGCCACCAACAAGGGCTAATCAATGATGATGAG 2003 | |||| | |||||||| ||| |||| ||||| | |||||| | |||||||||||| || Sbjct 654 GCAAAAGAAGGTTTTTGCACAATCACTAGCCATCCGCAAGGGATTATCAATGATGATCAG 713 Query 2004 GTCTATGAATGG 2015 || ||| |||| Sbjct 714 GTGTATACATGG 725 >seq57530 Length=397 Score = 118 bits (130), Expect = 3e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 5613 CAACAGTTTATCCACTTTACTATGGAGATATGTCGCAAGCTATTACATTGTTTGACCGTG 5672 || |||||||||| | || ||||| ||| | || || ||| ||| ||||||||||| Sbjct 320 CACCAGTTTATCCGTTATATTATGGCGATCTTTCTCAGGCTGCCACACTGTTTGACCGTC 261 Query 5673 AAAACATGTCATTACTTCCAACAAATATTGGTGCTGGTGCATTTGAAACTGATACTACTA 5732 || | ||| || || || || |||||||||||||| ||||| |||| |||| Sbjct 260 AACAGATGAGCTTGGTTGTCACCAACATTGGTGCTGGTGCGTTTGAGCATGATCAGACTA 201 Query 5733 AAATTCGTGTAATCGATCGCTTCGATGTTAAAACTACTGACTCAGAAGCTTTAGTTGCTG 5792 | | ||||| ||||| ||||||||||| || | ||||| | || || || || |||| Sbjct 200 AGCTGCGTGTCATCGACCGCTTCGATGTGCAAGCAACTGATGCTGATGCCTTTGTGGCTG 141 Query 5793 GTTCATTTACTGCAATTGCAGACCA 5817 | || || | |||||||| ||||| Sbjct 140 GATCGTTCTCCGCAATTGCTGACCA 116 >seq13777 Length=642 Score = 80.6 bits (88), Expect = 7e-11 Identities = 143/206 (69%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 4137 AATATTGAGGGAATCGCAGCATCTGCAGCTTCAGTAATTGCAATGGCTGGAGATACGGTG 4196 ||||||| || | |||||||||||||| ||||| |||| | || ||||||| || Sbjct 209 AATATTGTTGGCCTTGCAGCATCTGCAGCATCAGTGGTTGCCTTAGCGGGAGATAAAGTC 150 Query 4197 AATATCTCTCCAACAGCCCAATTGATGATTCATAAGGCTATGAGTGGTAGCCAA-GGGAA 4255 | || | |||||||| ||| |||||||||| | || || | | ||| || || || Sbjct 149 GAGATGGCACCAACAGCTCAACTGATGATTCACAGAGC-ATCAACGTCAGCAAACGGCAA 91 Query 4256 TGCTGATGACTTTGAGCAAGAAGCTAAAGTTTTAAATGGTGTTGACCAATCTATTGCTGC 4315 || ||||| || | || || || ||| | || |||||||||| | | || Sbjct 90 TGTTGATGCATTAAATTCAGCAGGCCAATCGTTAGACAGTATTGACCAATCATTGGTTGA 31 Query 4316 AGCTTATGAATTAAAAACTGGTATGA 4341 | ||||| | |||||||||||||| Sbjct 30 TGTTTATGTAGCAAAAACTGGTATGA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127482168853240