Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq26661 140 3e-28
seq153189 116 3e-21
seq117562 113 4e-20
seq210337 107 2e-18
seq54724 100 2e-16
seq236154 89.7 4e-13
>seq26661
Length=2801
Score = 140 bits (154), Expect = 3e-28
Identities = 161/215 (75%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--TTCAGTTGGCGATCGT 45182
|| |||||||| || || |||||| || |||||||||||| | |||| ||| |||
Sbjct 1841 AACACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTT--CGACCGT 1784
Query 45183 CGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGT 45242
| || ||||| ||||||||||| ||||| | ||| ||||| ||||| | ||| |||||||
Sbjct 1783 CTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCCTTGT 1724
Query 45243 CCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCG 45302
|| |||||| || || | | | |||| | ||| ||||| | |||||| |
Sbjct 1723 CCTGGATTTTTGCTTTCACGTTATCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAATAG 1664
Query 45303 TCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|||||||||||| ||||| |||||||| ||||||
Sbjct 1663 TCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATG 1629
Score = 122 bits (134), Expect = 7e-23
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||| || |||||||||||| || || |||| || ||||| |||||||||||
Sbjct 1365 CTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCCTCGAGTTGCTTTCCGGCGAA 1306
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||||| ||| ||||| || || | || ||||||||| || || ||| ||
Sbjct 1305 GATCAACCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 1246
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | |||| || ||| ||||| | |||||||||||||||||||| |||||| ||
Sbjct 1245 GTCAATGGTGTCAGAACTCTCAACCTCGAGGGTAATCGTCTTGCCCGTCAAAGTCTTGAC 1186
Query 45325 AAAGATTTGCAT 45336
||||| |||||
Sbjct 1185 GAAGATCTGCAT 1174
Score = 116 bits (128), Expect = 3e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|| ||||||||||| || |||||||||||||| |||||| |||| || | ||
Sbjct 2069 AAGACCAAGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCGGCCAGTGTACGGCCATCC 2010
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| || || || || ||||| || | ||||| ||||| ||||| | ||| || ||||||
Sbjct 2009 TCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCTTTGTCC 1950
Query 45245 GCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303
|| | || |||| || | | | | |||| | ||||||||| | |||||| ||
Sbjct 1949 TGAA-TCTTAGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCAAGGGTAATAGT 1891
Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| || |||| |||||||| |||||||||||
Sbjct 1890 CTTACCAGTCAAGGTCTTCACGAAGATTTGCAT 1858
Score = 102 bits (112), Expect = 6e-17
Identities = 149/206 (72%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTT 45191
|| ||||| ||||||||||||||||||||| || ||| || |||| || ||||
Sbjct 1604 TGAAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTT--CGGCCGTCTTCAAGTT 1547
Query 45192 GTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTT 45251
| ||||||||||| ||||| | ||| || || || || | ||| ||||||||| | |
Sbjct 1546 GCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGAATACCTTCCTTGTCCTGGA-TC 1488
Query 45252 TTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCC 45310
|| |||| || | | | |||| | || || |||| ||||| |||||||||
Sbjct 1487 TTGGCTTTCACGTTGTCAATTGTGTCTGAGCTTTCAACTTCCAAAGTAATGGTCTTGCCC 1428
Query 45311 GTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||||| |||||||| |||||
Sbjct 1427 GTCAAGGTCTTGACAAAGATCTGCAT 1402
>seq153189
Length=17048
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|| |||||||| || || |||||||||||||||||||||| || ||| | ||
Sbjct 14492 AACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGTCCATCT 14433
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|||| ||| ||||||||||| ||||| | ||| || || ||||| | ||| |||||||||
Sbjct 14432 TCCAATTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTGTCC 14373
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
|| || ||||| | | ||||| | |||||||| | ||| || |||
Sbjct 14372 TGGATCTTGGCTTTAACATTGTCGATCGTGTCCGAGCTTTCCACCTCGAGGGTGATTGTC 14313
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || |||||||| || ||||| |||||
Sbjct 14312 TTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 14281
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183
||| |||||||||| || |||||| ||||||||||| || ||| |||| | ||
Sbjct 14721 TAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCATC 14662
Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243
|| || ||||| || ||||| || | ||||| ||||| || || | || ||||||||
Sbjct 14661 CTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTC 14602
Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303
| || || ||| || | | | |||| | ||||||||| | |||||| ||
Sbjct 14601 CTGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACCTCGAGGGTAATAGT 14542
Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| || |||| || || || ||||| |||||
Sbjct 14541 CTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183
||| |||||||||| || |||||| ||||||||||| || ||| |||| | ||
Sbjct 14949 TAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCATC 14890
Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243
|| || ||||| || ||||| || | ||||| ||||| || || | || ||||||||
Sbjct 14889 CTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTC 14830
Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303
| || || ||| || | | | |||| | ||| || || | ||| || ||
Sbjct 14829 CTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCAAGGGTGATTGT 14770
Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||||| || |||||||| || || || |||||
Sbjct 14769 CTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 14737
>seq117562
Length=2070
Score = 113 bits (124), Expect = 4e-20
Identities = 153/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGT 45185
|||||| || || || ||| |||||||| |||||||| | | || || || | || |
Sbjct 1896 TACCAAATGAAGAGTCGACTCTTTCTGAATATTGTAGTCTGCTAAGGTG-CGTCCATCTT 1838
Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245
| ||||| || ||||| || || | | ||| || || ||||| | || |||||||||
Sbjct 1837 CGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATCCCTTCCTTGTCCT 1778
Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305
||| || ||| || | | ||||| | ||| ||||||| |||||| ||||
Sbjct 1777 GAATCTTAGCCTTGACATTATCAATAGTGTCCGAGCTCTCAACCTCCAAGGTAATAGTCT 1718
Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| |||| |||||||||||||||||||||
Sbjct 1717 TGCCTGTCAAAGTCTTCACAAAGATTTGCAT 1687
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||||||||||| | |||||||||| || ||||||||| ||||| ||||| |
Sbjct 1229 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCC 1170
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| || | || || || ||||| |||||||| ||||| || || || || |||||
Sbjct 1169 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGA 1110
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || ||||||||| || ||| ||| || | | | |||| | ||| |||
Sbjct 1109 ATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 1050
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | || || ||||| || || ||||| ||||| || ||||||||
Sbjct 1049 TCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTCACGAATATTTGCAT 1003
>seq210337
Length=1863
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || || || |||||||| ||||| || || ||| | || ||
Sbjct 376 ACCAAATGAAGAGTCGATTCTTTCTGAATATTGTAATCCGCCAAAGTCCGACCATCCTCA 435
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || ||||| || | | ||||||||| ||||| | || || |||||| |
Sbjct 436 AGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCTTTGTCCTGA 495
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| ||| || | | ||||| | ||| ||||||| |||||| ||||||
Sbjct 496 ATTTTAGCCTTCACATTATCAATAGTGTCCGAGCTCTCAACCTCCAAGGTAATAGTCTTG 555
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| |||||||||||||||||||||
Sbjct 556 CCTGTCAAAGTCTTCACAAAGATTTGCAT 584
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||||||||||| | |||||||||| || ||||||||| ||||| ||||| |
Sbjct 1498 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCC 1557
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| || | || || |||||||| |||||||| ||||| || || || || |||||
Sbjct 1558 AAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGA 1617
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || ||||||||| || ||| ||| || | | | |||| | ||| |||
Sbjct 1618 ATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 1677
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | || || ||||| || || || || ||||| || ||||||||
Sbjct 1678 TCGAGAGTTATGGTCTTTCCAGTAAGCGTTTTCACGAATATTTGCAT 1724
>seq54724
Length=7877
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181
|||| |||||||| |||||| |||||||| |||||||| || || || |
Sbjct 1633 CTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCCAAGGTACGGCCA 1574
Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241
|| |||| || ||||||||||| ||||| | ||| || || ||||| | || |||||
Sbjct 1573 TCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTTA 1514
Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301
||| ||| || |||||| | | | || || |||||||| | ||| ||
Sbjct 1513 TCCTGAATCTTAGCCTTAACGTTGTCGATCGTATCAGAACTTTCCACCTCGAGGGTGATA 1454
Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| || || ||||| ||||||||||| |||||
Sbjct 1453 GTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 1419
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| ||||||||||| || |||| | || ||
Sbjct 2311 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCA 2252
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| || | || |||||||| ||||| | ||||| ||||||
Sbjct 2251 AGCTGCTTCCCAGCGAAGATGAGACGTTGTTGGTCCGGAGGAATCCCCTCTTTGTCCTGG 2192
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||| ||||| | |||||| || ||
Sbjct 2191 ATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCGACCTCAAGGGTAATGGTTTTA 2132
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| ||||| |||||||| |||||
Sbjct 2131 CCGGTCAAGGTCTTGACAAAGATCTGCAT 2103
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| ||||||||||| || ||| |||| || ||||| |||||||||||
Sbjct 1838 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCAAGTTGCTTTCCGGCGAA 1779
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|| || | ||| || || ||||| | || ||||| || || || ||| ||
Sbjct 1778 GATTAATCTCTGCTGATCCGGAGGAATTCCTTCCTTATCTTGGATCTTAGCCTTGACGTT 1719
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | |||| || ||| ||||| | |||||| || || || |||| ||||| ||
Sbjct 1718 GTCGATGGTGTCAGAACTCTCAACCTCGAGGGTAATAGTTTTACCAGTCAAGGTCTTAAC 1659
Query 45325 AAAGATTTGCAT 45336
|||||| |||||
Sbjct 1658 AAAGATCTGCAT 1647
>seq236154
Length=204
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|| |||||||| || || |||||||| |||||||||||| ||| ||| ||||
Sbjct 50 AACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGTGTGCGTCCGTCT 109
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243
|| ||||| |||||||| || ||||| || |||||||| || || | ||| || |||||
Sbjct 110 TCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTC 168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 393788502791788
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