Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq26661 140 3e-28 seq153189 116 3e-21 seq117562 113 4e-20 seq210337 107 2e-18 seq54724 100 2e-16 seq236154 89.7 4e-13 >seq26661 Length=2801 Score = 140 bits (154), Expect = 3e-28 Identities = 161/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--TTCAGTTGGCGATCGT 45182 || |||||||| || || |||||| || |||||||||||| | |||| ||| ||| Sbjct 1841 AACACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTT--CGACCGT 1784 Query 45183 CGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGT 45242 | || ||||| ||||||||||| ||||| | ||| ||||| ||||| | ||| ||||||| Sbjct 1783 CTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCCTTGT 1724 Query 45243 CCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCG 45302 || |||||| || || | | | |||| | ||| ||||| | |||||| | Sbjct 1723 CCTGGATTTTTGCTTTCACGTTATCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAATAG 1664 Query 45303 TCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||||||| ||||| |||||||| |||||| Sbjct 1663 TCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATG 1629 Score = 122 bits (134), Expect = 7e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| || |||||||||||| || || |||| || ||||| ||||||||||| Sbjct 1365 CTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCCTCGAGTTGCTTTCCGGCGAA 1306 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | || ||||||||| || || ||| || Sbjct 1305 GATCAACCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 1246 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||| ||||| | |||||||||||||||||||| |||||| || Sbjct 1245 GTCAATGGTGTCAGAACTCTCAACCTCGAGGGTAATCGTCTTGCCCGTCAAAGTCTTGAC 1186 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 1185 GAAGATCTGCAT 1174 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||||||||| || |||||||||||||| |||||| |||| || | || Sbjct 2069 AAGACCAAGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCGGCCAGTGTACGGCCATCC 2010 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || ||||| || | ||||| ||||| ||||| | ||| || |||||| Sbjct 2009 TCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCTTTGTCC 1950 Query 45245 GCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 || | || |||| || | | | | |||| | ||||||||| | |||||| || Sbjct 1949 TGAA-TCTTAGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCCACCTCAAGGGTAATAGT 1891 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || |||| |||||||| ||||||||||| Sbjct 1890 CTTACCAGTCAAGGTCTTCACGAAGATTTGCAT 1858 Score = 102 bits (112), Expect = 6e-17 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTT 45191 || ||||| ||||||||||||||||||||| || ||| || |||| || |||| Sbjct 1604 TGAAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTT--CGGCCGTCTTCAAGTT 1547 Query 45192 GTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTT 45251 | ||||||||||| ||||| | ||| || || || || | ||| ||||||||| | | Sbjct 1546 GCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGAATACCTTCCTTGTCCTGGA-TC 1488 Query 45252 TTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCC 45310 || |||| || | | | |||| | || || |||| ||||| ||||||||| Sbjct 1487 TTGGCTTTCACGTTGTCAATTGTGTCTGAGCTTTCAACTTCCAAAGTAATGGTCTTGCCC 1428 Query 45311 GTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| |||||||| ||||| Sbjct 1427 GTCAAGGTCTTGACAAAGATCTGCAT 1402 >seq153189 Length=17048 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||||||||||||||||||| || ||| | || Sbjct 14492 AACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGTCCATCT 14433 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| ||||||||||| ||||| | ||| || || ||||| | ||| ||||||||| Sbjct 14432 TCCAATTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTGTCC 14373 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||||| | | ||||| | |||||||| | ||| || ||| Sbjct 14372 TGGATCTTGGCTTTAACATTGTCGATCGTGTCCGAGCTTTCCACCTCGAGGGTGATTGTC 14313 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| || ||||| ||||| Sbjct 14312 TTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 14281 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||| |||||||||| || |||||| ||||||||||| || ||| |||| | || Sbjct 14721 TAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCATC 14662 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || || ||||| || ||||| || | ||||| ||||| || || | || |||||||| Sbjct 14661 CTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTC 14602 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | || || ||| || | | | |||| | ||||||||| | |||||| || Sbjct 14601 CTGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACCTCGAGGGTAATAGT 14542 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || |||| || || || ||||| ||||| Sbjct 14541 CTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||| |||||||||| || |||||| ||||||||||| || ||| |||| | || Sbjct 14949 TAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCATC 14890 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || || ||||| || ||||| || | ||||| ||||| || || | || |||||||| Sbjct 14889 CTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTC 14830 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | || || ||| || | | | |||| | ||| || || | ||| || || Sbjct 14829 CTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCAAGGGTGATTGT 14770 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||| || |||||||| || || || ||||| Sbjct 14769 CTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 14737 >seq117562 Length=2070 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGT 45185 |||||| || || || ||| |||||||| |||||||| | | || || || | || | Sbjct 1896 TACCAAATGAAGAGTCGACTCTTTCTGAATATTGTAGTCTGCTAAGGTG-CGTCCATCTT 1838 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | ||||| || ||||| || || | | ||| || || ||||| | || ||||||||| Sbjct 1837 CGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATCCCTTCCTTGTCCT 1778 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||| || ||| || | | ||||| | ||| ||||||| |||||| |||| Sbjct 1777 GAATCTTAGCCTTGACATTATCAATAGTGTCCGAGCTCTCAACCTCCAAGGTAATAGTCT 1718 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| |||| ||||||||||||||||||||| Sbjct 1717 TGCCTGTCAAAGTCTTCACAAAGATTTGCAT 1687 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||||| | |||||||||| || ||||||||| ||||| ||||| | Sbjct 1229 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCC 1170 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || | || || || ||||| |||||||| ||||| || || || || ||||| Sbjct 1169 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGA 1110 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || ||| ||| || | | | |||| | ||| ||| Sbjct 1109 ATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 1050 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || || ||||| ||||| || |||||||| Sbjct 1049 TCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTCACGAATATTTGCAT 1003 >seq210337 Length=1863 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || || |||||||| ||||| || || ||| | || || Sbjct 376 ACCAAATGAAGAGTCGATTCTTTCTGAATATTGTAATCCGCCAAAGTCCGACCATCCTCA 435 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || ||||| || | | ||||||||| ||||| | || || |||||| | Sbjct 436 AGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCTTTGTCCTGA 495 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | ||||| | ||| ||||||| |||||| |||||| Sbjct 496 ATTTTAGCCTTCACATTATCAATAGTGTCCGAGCTCTCAACCTCCAAGGTAATAGTCTTG 555 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||||||||||||| Sbjct 556 CCTGTCAAAGTCTTCACAAAGATTTGCAT 584 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||||| | |||||||||| || ||||||||| ||||| ||||| | Sbjct 1498 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCC 1557 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || | || || |||||||| |||||||| ||||| || || || || ||||| Sbjct 1558 AAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGA 1617 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || ||| ||| || | | | |||| | ||| ||| Sbjct 1618 ATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 1677 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || || || || ||||| || |||||||| Sbjct 1678 TCGAGAGTTATGGTCTTTCCAGTAAGCGTTTTCACGAATATTTGCAT 1724 >seq54724 Length=7877 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 |||| |||||||| |||||| |||||||| |||||||| || || || | Sbjct 1633 CTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCCAAGGTACGGCCA 1574 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || |||| || ||||||||||| ||||| | ||| || || ||||| | || ||||| Sbjct 1573 TCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTTA 1514 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| ||| || |||||| | | | || || |||||||| | ||| || Sbjct 1513 TCCTGAATCTTAGCCTTAACGTTGTCGATCGTATCAGAACTTTCCACCTCGAGGGTGATA 1454 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || ||||| ||||||||||| ||||| Sbjct 1453 GTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 1419 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| || |||| | || || Sbjct 2311 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCA 2252 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | || |||||||| ||||| | ||||| |||||| Sbjct 2251 AGCTGCTTCCCAGCGAAGATGAGACGTTGTTGGTCCGGAGGAATCCCCTCTTTGTCCTGG 2192 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||| | |||||| || || Sbjct 2191 ATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCGACCTCAAGGGTAATGGTTTTA 2132 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| |||||||| ||||| Sbjct 2131 CCGGTCAAGGTCTTGACAAAGATCTGCAT 2103 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| || ||||| ||||||||||| Sbjct 1838 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCAAGTTGCTTTCCGGCGAA 1779 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || || | ||| || || ||||| | || ||||| || || || ||| || Sbjct 1778 GATTAATCTCTGCTGATCCGGAGGAATTCCTTCCTTATCTTGGATCTTAGCCTTGACGTT 1719 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||| ||||| | |||||| || || || |||| ||||| || Sbjct 1718 GTCGATGGTGTCAGAACTCTCAACCTCGAGGGTAATAGTTTTACCAGTCAAGGTCTTAAC 1659 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 1658 AAAGATCTGCAT 1647 >seq236154 Length=204 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||||| |||||||||||| ||| ||| |||| Sbjct 50 AACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGTGTGCGTCCGTCT 109 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || ||||| |||||||| || ||||| || |||||||| || || | ||| || ||||| Sbjct 110 TCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTC 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393788502791788