Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq146431 127 2e-24
seq27195 113 4e-20
>seq146431
Length=15796
Score = 127 bits (140), Expect = 2e-24
Identities = 368/563 (65%), Gaps = 9/563 (2%)
Strand=Plus/Plus
Query 14198 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 14257
|| ||||| || |||||||| || | || || |||| || | |||||| || ||
Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181
Query 14258 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 14317
|||||||| ||||| | ||| ||||| || | ||| || || | | ||| || ||
Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAG 4241
Query 14318 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14377
||||| || || ||||| ||| || |||| | |||||| |||| | ||| |
Sbjct 4242 AAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAG-----TTTGAG 4296
Query 14378 TTCGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14435
|| || ||||| | ||||||||| || ||| || || | || |||||||| |
Sbjct 4297 ATCCATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGA 4356
Query 14436 TAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA-TAAGTAAG 14494
|| |||| ||| || ||||||| || | ||||| ||||| | |||| |
Sbjct 4357 CTGCGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGA- 4415
Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554
|||||||| ||||| || || || || || || || ||||| || || || | |||
Sbjct 4416 CTATACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCT 4475
Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614
|| || |||||| ||||| |||| || | |||||| || || || |||
Sbjct 4476 TCGGAGACTTGTACATCTGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCA 4535
Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT 14674
|| || || || || | | || ||| || |||| | ||| | | | |||| |||
Sbjct 4536 GATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTT 4595
Query 14675 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACA 14734
| ||| || | || | || ||||||||||| || | ||||| || || |
Sbjct 4596 TCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCG 4655
Query 14735 GCTTTTTTATACATTACCCATAT 14757
||||| || ||||| |||| ||
Sbjct 4656 GCTTTCTTGTACATCTCCCAGAT 4678
>seq27195
Length=13093
Score = 113 bits (124), Expect = 4e-20
Identities = 541/852 (63%), Gaps = 15/852 (2%)
Strand=Plus/Minus
Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971
||| || || |||| |||||| || ||||| ||||||||||| |||| || || ||
Sbjct 9523 TTTCTGGTAATCACCAACTCTCTTCTCAAAAAAGTTAGTTTTCCCTTGAAGCGAGATTAA 9464
Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030
||||| ||||||| ||||| || ||| |||| ||| || | || || | |
Sbjct 9463 CTCCATCCAATCAAACGGATTAGTC-ACACCGTACACCTTACCATACCCAAGCGCACCCA 9405
Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090
| |||||||||| ||||||||||| | | ||| || |||| |||||| |||| |
Sbjct 9404 AAAGCCTATCCGCAACAAACTCAATATACTCACTCATCAATTCACGATTCATCCCTACCA 9345
Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150
|||| | | | ||| ||| | || || |||||| ||| | ||
Sbjct 9344 ACGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCCACAGCGTCGCACACAA 9285
Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACGC 14208
| | | | || | | || | || ||| || | | || | || ||
Sbjct 9284 TCGACTTCACTCGCTCCTCCGTC--AGCTTCGTTCGGAGAAGTGTGTAGATCAGGCAAGC 9227
Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268
||||| || || | ||| || |||| || | |||||||| || ||||| || ||
Sbjct 9226 GAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCAGG 9167
Query 14269 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 14328
||| | ||||||||||| | ||| || || | | ||| ||||| ||||| || ||
Sbjct 9166 CATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATACC 9107
Query 14329 CTCAACTGCA-GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--AT 14385
|| || ||| || || || | | |||||| | || | | | | || || ||
Sbjct 9106 TTCGAC-GCACGCGAAAGCGACGATTCGTTCAGCGAAAG-----TCTGAGATCCATCGAT 9053
Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445
|||| | ||||||||| || ||| || | || |||||||| || || ||
Sbjct 9052 CCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAA 8993
Query 14446 TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14505
| ||| || ||||||| || | ||||||||||| | ||| | |||||||| ||
Sbjct 8992 GAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTC 8933
Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565
||| || || || || || || ||||| || || || ||| | ||||| || |||
Sbjct 8932 AGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGACTTG 8873
Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625
||| ||||| |||| || | ||| || ||| || || ||| || || ||
Sbjct 8872 TACATCTGACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGAA 8813
Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGC 14685
|| || | | || ||| || |||| | ||| | | | |||| || | ||| ||
Sbjct 8812 GAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTCTCCCAGTCACG 8753
Query 14686 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745
| || | || ||||||||||| || | ||||| || || | ||||| || ||
Sbjct 8752 TCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTGTA 8693
Query 14746 CATTACCCATAT 14757
||| |||| ||
Sbjct 8692 CATCTCCCAGAT 8681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 480734396875040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |