Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq146431 127 2e-24 seq27195 113 4e-20 >seq146431 Length=15796 Score = 127 bits (140), Expect = 2e-24 Identities = 368/563 (65%), Gaps = 9/563 (2%) Strand=Plus/Plus Query 14198 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 14257 || ||||| || |||||||| || | || || |||| || | |||||| || || Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181 Query 14258 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 14317 |||||||| ||||| | ||| ||||| || | ||| || || | | ||| || || Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAG 4241 Query 14318 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14377 ||||| || || ||||| ||| || |||| | |||||| |||| | ||| | Sbjct 4242 AAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAG-----TTTGAG 4296 Query 14378 TTCGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14435 || || ||||| | ||||||||| || ||| || || | || |||||||| | Sbjct 4297 ATCCATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGA 4356 Query 14436 TAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA-TAAGTAAG 14494 || |||| ||| || ||||||| || | ||||| ||||| | |||| | Sbjct 4357 CTGCGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGA- 4415 Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 |||||||| ||||| || || || || || || || ||||| || || || | ||| Sbjct 4416 CTATACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCT 4475 Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 || || |||||| ||||| |||| || | |||||| || || || ||| Sbjct 4476 TCGGAGACTTGTACATCTGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCA 4535 Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT 14674 || || || || || | | || ||| || |||| | ||| | | | |||| ||| Sbjct 4536 GATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTT 4595 Query 14675 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACA 14734 | ||| || | || | || ||||||||||| || | ||||| || || | Sbjct 4596 TCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCG 4655 Query 14735 GCTTTTTTATACATTACCCATAT 14757 ||||| || ||||| |||| || Sbjct 4656 GCTTTCTTGTACATCTCCCAGAT 4678 >seq27195 Length=13093 Score = 113 bits (124), Expect = 4e-20 Identities = 541/852 (63%), Gaps = 15/852 (2%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| || || |||| |||||| || ||||| ||||||||||| |||| || || || Sbjct 9523 TTTCTGGTAATCACCAACTCTCTTCTCAAAAAAGTTAGTTTTCCCTTGAAGCGAGATTAA 9464 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030 ||||| ||||||| ||||| || ||| |||| ||| || | || || | | Sbjct 9463 CTCCATCCAATCAAACGGATTAGTC-ACACCGTACACCTTACCATACCCAAGCGCACCCA 9405 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 | |||||||||| ||||||||||| | | ||| || |||| |||||| |||| | Sbjct 9404 AAAGCCTATCCGCAACAAACTCAATATACTCACTCATCAATTCACGATTCATCCCTACCA 9345 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 |||| | | | ||| ||| | || || |||||| ||| | || Sbjct 9344 ACGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCCACAGCGTCGCACACAA 9285 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACGC 14208 | | | | || | | || | || ||| || | | || | || || Sbjct 9284 TCGACTTCACTCGCTCCTCCGTC--AGCTTCGTTCGGAGAAGTGTGTAGATCAGGCAAGC 9227 Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268 ||||| || || | ||| || |||| || | |||||||| || ||||| || || Sbjct 9226 GAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCAGG 9167 Query 14269 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 14328 ||| | ||||||||||| | ||| || || | | ||| ||||| ||||| || || Sbjct 9166 CATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATACC 9107 Query 14329 CTCAACTGCA-GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--AT 14385 || || ||| || || || | | |||||| | || | | | | || || || Sbjct 9106 TTCGAC-GCACGCGAAAGCGACGATTCGTTCAGCGAAAG-----TCTGAGATCCATCGAT 9053 Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 |||| | ||||||||| || ||| || | || |||||||| || || || Sbjct 9052 CCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAA 8993 Query 14446 TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14505 | ||| || ||||||| || | ||||||||||| | ||| | |||||||| || Sbjct 8992 GAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTC 8933 Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565 ||| || || || || || || ||||| || || || ||| | ||||| || ||| Sbjct 8932 AGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGACTTG 8873 Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 ||| ||||| |||| || | ||| || ||| || || ||| || || || Sbjct 8872 TACATCTGACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGAA 8813 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGC 14685 || || | | || ||| || |||| | ||| | | | |||| || | ||| || Sbjct 8812 GAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTCTCCCAGTCACG 8753 Query 14686 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 | || | || ||||||||||| || | ||||| || || | ||||| || || Sbjct 8752 TCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTGTA 8693 Query 14746 CATTACCCATAT 14757 ||| |||| || Sbjct 8692 CATCTCCCAGAT 8681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480734396875040