Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq26661 93.3 3e-14 seq204555 91.5 1e-13 seq50902 87.8 1e-12 seq46463 82.4 6e-11 >seq26661 Length=2801 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| |||||| |||||||| ||||| |||||||| || ||| Sbjct 1172 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCCGCC 1113 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||| || || ||| ||||||| || || |||||| || Sbjct 1112 AAGGTACGGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 1053 Query 18219 ACGCCTTCCTTATC 18232 | |||||||| || Sbjct 1052 ATACCTTCCTTGTC 1039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| ||||| || ||||| |||||||||||||| | ||| || ||||| Sbjct 1838 ACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGACCGTCTTCA 1779 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | ||| || || || |||| | ||| || || ||| || | |||||||| || Sbjct 1778 AGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 1719 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| |||| || || | ||| ||||| | |||| || | ||| || | || Sbjct 1718 ATTT-TTGCTTTCACGTTATCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAATAGTCTT 1660 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||| || || ||||| || ||||| Sbjct 1659 GCCCGTCAAGGTCTTGACAAAGATCTGCAT 1630 >seq204555 Length=10983 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | |||||| ||||| ||||| |||||||||||||| || Sbjct 1263 TCCACCACGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGC 1322 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||| | |||||| |||||| |||| || || || || ||| || Sbjct 1323 TAATGTCCGACCATCTTCGAGTTGTTTCCCCGCAAAGATTAGCCTCTGCTGGTCCGGTGG 1382 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||| | | ||| || | ||| ||||| | ||| Sbjct 1383 GATCCCTTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATCGTGTCTGAGCTCTCAAC 1442 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| |||| ||||| | || || || || || ||||| Sbjct 1443 TTCCAAAGTTATGGTTTTACCGGTAAGGGTCTTAACGAATATCTGCAT 1490 >seq50902 Length=6384 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | |||||| || || ||||| |||||||||||||| || Sbjct 4583 TCCACCACGGAGACGGAGAACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCCGC 4524 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||| | ||||| |||||| |||| || || ||||| ||| || Sbjct 4523 TAATGTCCGACCATCTTCGAGCTGTTTTCCCGCAAAGATTAGCCTCTGTTGGTCCGGAGG 4464 Query 18218 CACGCCTTCCTTATCGGCAA--TTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--T 18273 | ||||| ||||| || || ||| || || | || | ||| ||| || | Sbjct 4463 GATCCCTTCTTTATCTTGAATCTTCGTT--TTCACATTGTCA--ATTGTATCCGAGCTTT 4408 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||| |||||| |||| || ||||| || || || || || ||||| Sbjct 4407 CGACCTCAAGAGTGATGGTTTTACCCGTCAAAGTCTTGACGAATATCTGCAT 4356 >seq46463 Length=250 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||||| | ||||||||| |||||||| ||||| |||||||| | Sbjct 112 TCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 171 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | ||||||||||||||| || || |||| | || ||||| || || Sbjct 172 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 231 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 232 GATTCCTTCCTTGTC 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378108536812860