Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_003094.2
Length=130759
Score E
Sequences producing significant alignments: (Bits) Value
seq78792 95.1 1e-14
seq204555 87.8 1e-12
seq95318 82.4 6e-11
>seq78792
Length=14290
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| || || |||||| |||| || || || |||||| | || || |||||
Sbjct 11443 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCTTCG 11502
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | || | ||| || | || || | || ||||| | || ||||||
Sbjct 11503 GACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATTCCACCGGACCAG 11562
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
|||||||| || | ||| || |||||| ||||||| | || | |||||||| |
Sbjct 11563 CAACGTTTGATCTTTGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTACAAC 11622
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
|| ||||| || | |||||||||||||| | ||||| | |||||
Sbjct 11623 ATCCAGAAGGAATCGACGCTTCATTTAGTTCTGCGATTAAGAGGAGG 11669
>seq204555
Length=10983
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/207 (71%), Gaps = 8/207 (4%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
||||||||||| ||||| ||| | ||||| ||||| ||||| | || || || ||||
Sbjct 1490 ATGCAGATATTCGTTAAGACCCTTACCGGTAAAACCATAACTTTGGAAGTTGA---GAGC 1434
Query 24892 ---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948
|||| | || | ||| |||| ||| ||| | |||||||| | || |||
Sbjct 1433 TCAGACACGATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCGGAC 1374
Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAAC-GATTA 25007
||||| | |||| | |||||| |||||||| |||||| ||| || | | || ||
Sbjct 1373 CAGCAGAGGCTAATCTTTGCGGGGAAACAACTCGAAGATGGTCGGAC-ATTAGCGGACTA 1315
Query 25008 CAGCATACAGAAAGAGGCCACGCTTCA 25034
|| ||| ||||||||| | || |||||
Sbjct 1314 CAACATTCAGAAAGAGTCAACTCTTCA 1288
>seq95318
Length=15259
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 46133 AAATAGCCGTTTTCGCCCCAATCTTCTCCCCATGAATTTTTTATAATCCAATAGGGTACA 46192
|| ||||| || |||||||||||| |||||||||| || ||||||| |||||| || |||
Sbjct 10195 AAGTAGCCTTTATCGCCCCAATCTCCTCCCCATGAGTTCTTTATAACCCAATATGGAACA 10136
Query 46193 TTGTTTTCGATACCCCAACCGATAAGCAAAACGGCATGATTCAAATCATA 46242
|| ||| || || |||| | |||||| || || |||| ||| ||
Sbjct 10135 CCGTCTTCAATTCCATAACCAACCGCCAAAACCGCGTGGTTCACATCCTA 10086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 416941650277760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |