Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq78792 95.1 1e-14 seq204555 87.8 1e-12 seq95318 82.4 6e-11 >seq78792 Length=14290 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| |||| || || || |||||| | || || ||||| Sbjct 11443 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCTTCG 11502 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| || | || || | || ||||| | || |||||| Sbjct 11503 GACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATTCCACCGGACCAG 11562 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| || |||||| ||||||| | || | |||||||| | Sbjct 11563 CAACGTTTGATCTTTGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTACAAC 11622 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||| || | |||||||||||||| | ||||| | ||||| Sbjct 11623 ATCCAGAAGGAATCGACGCTTCATTTAGTTCTGCGATTAAGAGGAGG 11669 >seq204555 Length=10983 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| ||||| ||| | ||||| ||||| ||||| | || || || |||| Sbjct 1490 ATGCAGATATTCGTTAAGACCCTTACCGGTAAAACCATAACTTTGGAAGTTGA---GAGC 1434 Query 24892 ---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 |||| | || | ||| |||| ||| ||| | |||||||| | || ||| Sbjct 1433 TCAGACACGATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCGGAC 1374 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAAC-GATTA 25007 ||||| | |||| | |||||| |||||||| |||||| ||| || | | || || Sbjct 1373 CAGCAGAGGCTAATCTTTGCGGGGAAACAACTCGAAGATGGTCGGAC-ATTAGCGGACTA 1315 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCA 25034 || ||| ||||||||| | || ||||| Sbjct 1314 CAACATTCAGAAAGAGTCAACTCTTCA 1288 >seq95318 Length=15259 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 46133 AAATAGCCGTTTTCGCCCCAATCTTCTCCCCATGAATTTTTTATAATCCAATAGGGTACA 46192 || ||||| || |||||||||||| |||||||||| || ||||||| |||||| || ||| Sbjct 10195 AAGTAGCCTTTATCGCCCCAATCTCCTCCCCATGAGTTCTTTATAACCCAATATGGAACA 10136 Query 46193 TTGTTTTCGATACCCCAACCGATAAGCAAAACGGCATGATTCAAATCATA 46242 || ||| || || |||| | |||||| || || |||| ||| || Sbjct 10135 CCGTCTTCAATTCCATAACCAACCGCCAAAACCGCGTGGTTCACATCCTA 10086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416941650277760