Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq29837 154 3e-32 seq29830 150 4e-31 seq255492 118 2e-21 seq34509 105 1e-17 >seq29837 Length=4748 Score = 154 bits (170), Expect = 3e-32 Identities = 155/198 (78%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| || |||| || ||| |||| ||||||||| |||||| | | Sbjct 3705 AGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTAAAC 3646 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| | | || |||||||| || ||||||||| | | Sbjct 3645 TGATGGCACTTCCTCCATGCCACATGTTTTCACAGTTTTATGTTGCGAATGGAGAACTTT 3586 Query 35637 CGTGCCAGTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | ||||| |||||||||| ||| || ||| || | ||||| || || || ||||| Sbjct 3585 CATGCCAAATGTATCAGCGCTCAGCCGACATG--GGTCTTGGCGTACCATTTAACATTGC 3528 Query 35695 ATCATACTCTCTTCTGAC 35712 |||||||||||||| || Sbjct 3527 CTCATACTCTCTTCTTAC 3510 >seq29830 Length=9971 Score = 150 bits (166), Expect = 4e-31 Identities = 154/198 (78%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| || |||| || ||| |||| ||||||||| |||||| | | Sbjct 1055 AGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTAAAC 1114 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| | | || |||||||| || ||||||||| | | Sbjct 1115 TGATGGCACTTCCTCCATGCCACATGTTTTCACAGTTTTATGTTGCGAATGGAGAACTTT 1174 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || | ||||| || || || ||||| Sbjct 1175 CATGTCAAATGTATCAGCGCTCAGCCGATATG--GGTCTCGGCGTACCATTTAACATTGC 1232 Query 35695 ATCATACTCTCTTCTGAC 35712 |||||||||||||| || Sbjct 1233 CTCATACTCTCTTCTTAC 1250 >seq255492 Length=11799 Score = 118 bits (130), Expect = 2e-21 Identities = 178/251 (71%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAAT 35524 ||||||||||| | || |||||||| | || || || | | | | ||| | ||| Sbjct 6779 GATTATACTGGTCAAGGATTTGATCAACTCGCAGATGTAATCGACAAGATCAGAAACAAT 6720 Query 35525 CCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCT 35584 || |||||| | | || || | |||| ||||||||| || ||| | | ||||| Sbjct 6719 CCTGATGATCGCCGCATTATATTATCGGCTTGGAATCCTTCTGACCTTAAGTTGATGGCG 6660 Query 35585 CTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAG 35644 |||||||||||||||||| ||| || || ||||| || | || || | || || || Sbjct 6659 CTTCCTCCATGCCACATGTTTGCACAGTTCTATGTAGCAGAAGGGGAGCTCTCATGTCAA 6600 Query 35645 TTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACT 35702 |||||||||| |||||| ||| || | || ||||| || || ||||| || |||| Sbjct 6599 ATGTATCAGCGTTCAGCGGACATG--GGTCTTGGTGTGCCGTTTAACATTGCTTCCTACT 6542 Query 35703 CTCTTCTGACT 35713 ||||||| ||| Sbjct 6541 CTCTTCTTACT 6531 >seq34509 Length=4973 Score = 105 bits (116), Expect = 1e-17 Identities = 175/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAAT 35524 ||||||||||| | || |||||||| | || || | | | | | | | | ||| Sbjct 2223 GATTATACTGGTCAAGGATTTGATCAACTCGCAGATGTGATCGACAAGATAAAAAACAAT 2282 Query 35525 CCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCT 35584 || || ||| | | || || | | || ||||||||| |||||| | | ||||| Sbjct 2283 CCTGACGATCGGCGCATTATATTATCAGCTTGGAATCCTTCTGATCTTAAGTTGATGGCA 2342 Query 35585 CTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAG 35644 |||||||||||||||||| ||| || || |||||||| | || || | || || || Sbjct 2343 CTTCCTCCATGCCACATGTTTGCACAGTTCTATGTGGCAGACGGGGAGCTCTCATGTCAA 2402 Query 35645 TTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACT 35702 |||||||||| ||| || ||| || | || ||||| || || ||||| || |||| Sbjct 2403 ATGTATCAGCGTTCAGCAGACATG--GGTCTTGGTGTGCCGTTTAACATTGCGTCCTACT 2460 Query 35703 CTCTTCTGACT 35713 ||||||| ||| Sbjct 2461 CTCTTCTTACT 2471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 986195804162740