Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq249537 93.3 1e-14 seq48658 82.4 2e-11 >seq249537 Length=1253 Score = 93.3 bits (102), Expect = 1e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 17162 CTTTAGCTAAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAG 17221 |||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||||| Sbjct 1 CTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAATCCAG 60 Query 17222 CAAGGGCCA 17230 || |||||| Sbjct 61 CAGGGGCCA 69 >seq48658 Length=532 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 17333 ATGCGTTGTTAGCTCAGTCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCG 17392 ||||||| |||||||||| ||| ||||||| ||||||||||| | |||||| ||||| Sbjct 366 ATGCGTTCTTAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCACAGGTTCA 307 Query 17393 AATCCAGTACAACGC 17407 ||||| ||| ||||| Sbjct 306 AATCCTGTAGAACGC 292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135686451057432