Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq146431 161 9e-35 seq27195 127 2e-24 seq191921 93.3 4e-14 seq231195 86.0 6e-12 >seq146431 Length=15796 Score = 161 bits (178), Expect = 9e-35 Identities = 400/597 (67%), Gaps = 14/597 (2%) Strand=Plus/Plus Query 11624 ATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAAT 11683 || ||||| || |||||||| |||||||||||||||| || | ||| ||||| || Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181 Query 11684 GTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAA 11743 |||||||| ||||| | ||| ||||| || | ||| || || | | || ||| || Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAG 4241 Query 11744 AAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTA 11803 ||||| || || || ||| || || ||||| | || ||| || | | ||| | | Sbjct 4242 AAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCA-AAAGTTTG-AGATC 4299 Query 11804 GAT--ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861 || ||||| | | ||||| | ||||||||| || || |||||||| | | Sbjct 4300 CATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTG 4359 Query 11862 CGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || |||| ||| | | ||| | |||||| | | || ||||| | ||| | ||||| Sbjct 4360 CGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTAT 4419 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 |||| || ||||| ||||| || || || ||||||||||| ||||| || || || | Sbjct 4420 ACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGG 4479 Query 11982 AACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 | |||||||| |||| |||| || | ||| || || || || ||| Sbjct 4480 AGACTTGTACATCTGACAT-GAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGAT 4538 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGT---ATTTTTCGTC-TTTAGTTAATTT 12096 | || || || || || | ||||| || |||| || | |||| || || |||| Sbjct 4539 GCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAG---ATTT 4595 Query 12097 ATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCAC 12156 ||||| ||| | |||| ||||| |||||||||||| ||||||| || ||| | Sbjct 4596 -TCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTC 4654 Query 12157 TGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 | || || ||||| | |||||| | | || | ||| || || ||| ||| || Sbjct 4655 GGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711 >seq27195 Length=13093 Score = 127 bits (140), Expect = 2e-24 Identities = 383/586 (65%), Gaps = 4/586 (1%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || || ||||| || ||||| |||||||||| |||| || || || || ||||| Sbjct 9231 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAAC 9172 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||| | ||||||||||| | ||| || || | | || ||| || ||||| Sbjct 9171 CCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAG 9112 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATC 11809 || || || || || || || || | || ||| | | || | | ||| Sbjct 9111 ATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCCATCGATC 9052 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 ||| | | ||||| | ||||||||| ||||| |||||||| || ||| || Sbjct 9051 CATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAG 8992 Query 11870 AAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 | ||| | | ||| | |||||| | | |||||||| | | | ||||||||| || Sbjct 8991 AGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTCA 8932 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 ||||| ||||| || || || || || ||||| |||||| || || || || ||| Sbjct 8931 GAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGACTTGT 8872 Query 11990 ACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAA 12048 ||||| |||| || || || | |||||| || || || ||| | || || Sbjct 8871 ACATCTGACATGAA-TCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGAA 8813 Query 12049 AAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT-TTATCCCAATCAT 12107 || || || | ||||| || |||| ||| || | ||| | || ||||| ||| Sbjct 8812 GAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCTCCCAGTCAC 8754 Query 12108 CTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTAT 12167 | |||| ||||| |||||||||||| ||||||| || ||| | | || || | Sbjct 8753 GTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTGT 8694 Query 12168 ACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 |||| | |||||| | | || | ||| || || ||| ||| || Sbjct 8693 ACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648 >seq191921 Length=6033 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| |||||||| ||||| || | |||||||||||||| |||||||| | | Sbjct 4433 TTGAGGCCTGGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 4492 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| | | ||| |||| ||| || || |||||| | ||| || || | || Sbjct 4493 AGACATTAAGTGATAAGTTTTGATTGCAGAGTCAATATCATCCTTGTGGATGCCAACAGC 4552 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTA--TTTTATTATTCTGTTTAAGTAGA 38577 |||||||||||||| ||||| || || || | | ||| || || |||||| || Sbjct 4553 AACCCTCATTAGCATGTGTTGAGGCCTCTCAACAACTTTTCCTTGGACT-TTTAAG-AGG 4610 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATAT 38616 || ||| | || | ||||| | |||||| ||| |||| Sbjct 4611 TATGATCTCTCAAGCGTTTTGAATCCAAAGTAATCATAT 4649 >seq231195 Length=5996 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| ||||| || | |||||||||||||| |||||||| | | Sbjct 3365 TTGAGGCCTTGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 3424 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| | | || |||| ||| || || |||||| | ||| || || | || Sbjct 3425 AGACATTAAGTGGTAAGTTTTGATTGCAGAGTCAATATCATCCTTGTGGATGCCAACAGC 3484 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTA--TTTTATTATTCTGTTTAAGTAGA 38577 |||||||| ||||| ||||| || || || | | ||| || || |||||| || Sbjct 3485 AACCCTCATCAGCATGTGTTGAGGCCTCTCAACAACTTTTCCTTGGACT-TTTAAG-AGG 3542 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 || ||| | || | ||||| | |||||| ||| Sbjct 3543 TATGATCTCTCAAGCGTTTTGAATCCAAAGTAA 3575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466959763184320