Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq146431 161 9e-35
seq27195 127 2e-24
seq191921 93.3 4e-14
seq231195 86.0 6e-12
>seq146431
Length=15796
Score = 161 bits (178), Expect = 9e-35
Identities = 400/597 (67%), Gaps = 14/597 (2%)
Strand=Plus/Plus
Query 11624 ATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAAT 11683
|| ||||| || |||||||| |||||||||||||||| || | ||| ||||| ||
Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181
Query 11684 GTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAA 11743
|||||||| ||||| | ||| ||||| || | ||| || || | | || ||| ||
Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAG 4241
Query 11744 AAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTA 11803
||||| || || || ||| || || ||||| | || ||| || | | ||| | |
Sbjct 4242 AAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCA-AAAGTTTG-AGATC 4299
Query 11804 GAT--ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861
|| ||||| | | ||||| | ||||||||| || || |||||||| | |
Sbjct 4300 CATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTG 4359
Query 11862 CGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921
|| |||| ||| | | ||| | |||||| | | || ||||| | ||| | |||||
Sbjct 4360 CGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTAT 4419
Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981
|||| || ||||| ||||| || || || ||||||||||| ||||| || || || |
Sbjct 4420 ACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGG 4479
Query 11982 AACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040
| |||||||| |||| |||| || | ||| || || || || |||
Sbjct 4480 AGACTTGTACATCTGACAT-GAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGAT 4538
Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGT---ATTTTTCGTC-TTTAGTTAATTT 12096
| || || || || || | ||||| || |||| || | |||| || || ||||
Sbjct 4539 GCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAG---ATTT 4595
Query 12097 ATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCAC 12156
||||| ||| | |||| ||||| |||||||||||| ||||||| || ||| |
Sbjct 4596 -TCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTC 4654
Query 12157 TGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213
| || || ||||| | |||||| | | || | ||| || || ||| ||| ||
Sbjct 4655 GGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711
>seq27195
Length=13093
Score = 127 bits (140), Expect = 2e-24
Identities = 383/586 (65%), Gaps = 4/586 (1%)
Strand=Plus/Minus
Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689
|| || ||||| || ||||| |||||||||| |||| || || || || |||||
Sbjct 9231 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAAC 9172
Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749
|| ||||| | ||||||||||| | ||| || || | | || ||| || |||||
Sbjct 9171 CCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAG 9112
Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATC 11809
|| || || || || || || || | || ||| | | || | | |||
Sbjct 9111 ATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCCATCGATC 9052
Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869
||| | | ||||| | ||||||||| ||||| |||||||| || ||| ||
Sbjct 9051 CATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAG 8992
Query 11870 AAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929
| ||| | | ||| | |||||| | | |||||||| | | | ||||||||| ||
Sbjct 8991 AGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTCA 8932
Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989
||||| ||||| || || || || || ||||| |||||| || || || || |||
Sbjct 8931 GAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGACTTGT 8872
Query 11990 ACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAA 12048
||||| |||| || || || | |||||| || || || ||| | || ||
Sbjct 8871 ACATCTGACATGAA-TCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGAA 8813
Query 12049 AAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT-TTATCCCAATCAT 12107
|| || || | ||||| || |||| ||| || | ||| | || ||||| |||
Sbjct 8812 GAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCTCCCAGTCAC 8754
Query 12108 CTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTAT 12167
| |||| ||||| |||||||||||| ||||||| || ||| | | || || |
Sbjct 8753 GTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTGT 8694
Query 12168 ACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213
|||| | |||||| | | || | ||| || || ||| ||| ||
Sbjct 8693 ACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648
>seq191921
Length=6033
Score = 93.3 bits (102), Expect = 4e-14
Identities = 154/219 (70%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459
||||||| |||||||| ||||| || | |||||||||||||| |||||||| | |
Sbjct 4433 TTGAGGCCTGGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 4492
Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519
|||| | | ||| |||| ||| || || |||||| | ||| || || | ||
Sbjct 4493 AGACATTAAGTGATAAGTTTTGATTGCAGAGTCAATATCATCCTTGTGGATGCCAACAGC 4552
Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTA--TTTTATTATTCTGTTTAAGTAGA 38577
|||||||||||||| ||||| || || || | | ||| || || |||||| ||
Sbjct 4553 AACCCTCATTAGCATGTGTTGAGGCCTCTCAACAACTTTTCCTTGGACT-TTTAAG-AGG 4610
Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATAT 38616
|| ||| | || | ||||| | |||||| ||| ||||
Sbjct 4611 TATGATCTCTCAAGCGTTTTGAATCCAAAGTAATCATAT 4649
>seq231195
Length=5996
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459
||||||| ||||||||| ||||| || | |||||||||||||| |||||||| | |
Sbjct 3365 TTGAGGCCTTGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 3424
Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519
|||| | | || |||| ||| || || |||||| | ||| || || | ||
Sbjct 3425 AGACATTAAGTGGTAAGTTTTGATTGCAGAGTCAATATCATCCTTGTGGATGCCAACAGC 3484
Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTA--TTTTATTATTCTGTTTAAGTAGA 38577
|||||||| ||||| ||||| || || || | | ||| || || |||||| ||
Sbjct 3485 AACCCTCATCAGCATGTGTTGAGGCCTCTCAACAACTTTTCCTTGGACT-TTTAAG-AGG 3542
Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610
|| ||| | || | ||||| | |||||| |||
Sbjct 3543 TATGATCTCTCAAGCGTTTTGAATCCAAAGTAA 3575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 466959763184320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |