Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq146431 178 2e-39 seq27195 150 2e-31 seq205226 107 3e-18 seq191921 87.8 2e-12 >seq146431 Length=15796 Score = 178 bits (196), Expect = 2e-39 Identities = 400/593 (67%), Gaps = 6/593 (1%) Strand=Plus/Plus Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 |||||||| |||||||| ||||||| ||| ||||||| || |||||||| || || Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 36270 || | ||| ||||| || ||||| || |||||||| || || || || | | | || || Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAA-CAGAAGCTACCTGA 4240 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 36330 ||||| || ||||| || || || || | | || || || || | | Sbjct 4241 GAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATCC 4300 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 || ||||| | |||||| | || ||||| |||||||| ||||| || | || Sbjct 4301 ATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTGC 4360 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 || |||| | | | || || ||||||| | || ||||| | || |||||||| Sbjct 4361 GCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTATA 4420 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 ||| || ||||| || || ||||| || ||||||||||||||||| | || |||| Sbjct 4421 CATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGGA 4480 Query 36511 AATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | ||||| |||| ||| ||||| || | |||||| || ||||||||| | Sbjct 4481 GACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGATG 4539 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTATTC 36628 | || || || || | || ||||| || || | ||| | | ||| || || | | Sbjct 4540 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCC 4598 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || ||| |||| |||| ||| |||||||| | ||||| || ||||| || || Sbjct 4599 CAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 4658 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 || || ||||| | |||||| | | || ||||| ||||| ||| ||||| Sbjct 4659 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711 >seq27195 Length=13093 Score = 150 bits (166), Expect = 2e-31 Identities = 394/593 (66%), Gaps = 6/593 (1%) Strand=Plus/Minus Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 |||| || |||||||||||||||| || ||||||| ||||| ||||| || || Sbjct 9237 ATCAGGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAA 9178 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 36270 || | || ||||| || || || ||||| ||||| || || || || | | | || || Sbjct 9177 GTTAACCCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAA-CAGAAGCTACCGGA 9119 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 36330 ||||| || ||||| || ||| || || | | || || | || | | Sbjct 9118 GAAGAAGATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCC 9059 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 || ||||| | |||||| | || ||||| || ||||| ||||| || || || Sbjct 9058 ATCGATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGC 8999 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 ||||||| | | | || || ||||||| | |||||||| | | |||||||| Sbjct 8998 GCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATA 8939 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 ||| || ||||| || || ||||| || || || |||||||||||| | || || | Sbjct 8938 CATCTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGA 8879 Query 36511 AATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | ||||| |||| ||| ||||| || | ||| || || ||||||||| | Sbjct 8878 GACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATG 8820 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTATTC 36628 | || || || || | || ||||| || || | ||| | | ||| || || | | Sbjct 8819 CGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCTCC 8761 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || ||| |||| |||| ||| |||||||| | ||||| || ||||| || || Sbjct 8760 CAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCT 8701 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 || || ||||| | |||||| | | || ||||| ||||| ||| ||||| Sbjct 8700 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648 >seq205226 Length=4968 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | || || | |||| | || | || ||| |||| |||||| Sbjct 4506 TCCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 4565 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||| ||||| || || ||||||| |||||| |||| |||||||| ||| || Sbjct 4566 ATTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGA 4625 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || |||| || || || ||| ||||||||||| || Sbjct 4626 AACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAAT 4685 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||||| || ||||||||| |||| | ||||| ||||| Sbjct 4686 TCCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727 >seq191921 Length=6033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 66257 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC 66316 ||||||||||| ||||||||| || || |||||||| || || || |||||| |||| Sbjct 4145 CAACATTGGAACAATACCATTAGACGTTCCATTGGTGCCTCGAATGTAACTTCCAGTTGC 4204 Query 66317 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 66376 ||| |||||| || ||| | ||| || || || || ||| || | || || Sbjct 4205 ACGGATATTATGAACTGAAACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTC 4264 Query 66377 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 66419 ||| | || ||||| |||||||| || || ||||| ||||| Sbjct 4265 TTTGAGTGTTTCATATATGCCCTCAATGCTGTCATCTTTCATG 4307 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 65546 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 65605 ||| ||||| || ||||| | ||||| ||||||||||| ||||||||||||| | | || Sbjct 2808 GAGGATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTATGTCGCATGTT 2867 Query 65606 AGAGATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 65662 || ||| || ||| | |||||| ||||| | ||||||||| || |||||||| Sbjct 2868 TGACGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATAATCTTGTTGAGATT 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655974272487520