Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq34509 86.0 5e-12 seq29837 86.0 5e-12 >seq34509 Length=4973 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 |||||||||| | | || || || | |||| || ||||||||||| || || || Sbjct 2488 ACGTGAGCGAGTATGCAAGTAAGAAGAGAGTAGGACGCAATGTTAAACGGCACACCAAGA 2429 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAAC 21119 |||||||| || || | ||| |||| || || || |||||||| ||||| || ||| Sbjct 2428 CCCATGTCTGCTGAACGCTGATACATTTGACATGAGAGCTCCCCGTCTGCCACATAGAAC 2369 Query 21120 TGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCG 21179 || || | ||| || ||||| || |||||| | || || | || ||||| || Sbjct 2368 TGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTAAGATCAGAAGGATTCCAAGCT 2309 Query 21180 CACATAACGATGCGCCGATCGT 21201 | | | ||||||||||||| Sbjct 2308 GATAATATAATGCGCCGATCGT 2287 >seq29837 Length=4748 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 |||||||||| | |||| || || | ||| ||| |||||||| || || || || Sbjct 3492 ACGTGAGCGAGAATGCACGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTACGCCAAGA 3551 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAAC 21119 ||||||||||| || | ||| |||| ||||| || || || || || || |||||| Sbjct 3552 CCCATGTCGGCTGAGCGCTGATACATTTGGCATGAAAGTTCTCCATTCGCAACATAAAAC 3611 Query 21120 TGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCG 21179 || | || | ||| || ||||| || |||||| | || || | || ||||| || Sbjct 3612 TGTGAAAACATGTGGCATGGAGGAAGTGCCATCAGTTTAAGATCAGAAGGATTCCAAGCC 3671 Query 21180 CACATAACGATGCGCCGATC 21199 |||| | || || ||||| Sbjct 3672 GACATTATAATCCGTCGATC 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426382801477440