Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq26661 136 4e-27 seq153189 118 1e-21 seq54724 109 5e-19 seq210337 105 7e-18 seq117562 104 2e-17 seq50902 96.9 3e-15 seq214945 95.1 1e-14 seq236154 89.7 5e-13 seq185166 84.2 2e-11 >seq26661 Length=2801 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||| | ||||| || || ||||||||||| ||| | Sbjct 2084 CCACCACGGAGACGCAAGACCAAGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCGGCC 2025 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | || |||||||| |||||||| |||| ||||| ||||| || ||||| Sbjct 2024 AGTGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 1965 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | ||| | | || | ||||| | | |||||| Sbjct 1964 ATACCTTCTTTGTC-CTGAATCTTAGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCCAC 1906 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| ||| | ||||| || ||||| || || ||||| ||||||||| Sbjct 1905 CTCAAGGGTAATAGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCATA 1857 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || |||||||| || ||||| ||||| | Sbjct 2312 CCACCACGGAGACGGAGGACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAATCCGCC 2253 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || |||||||||||||||||| |||| ||||| ||||| || || || Sbjct 2252 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCAAAGATGAGACGCTGCTGGTCCGGTGGG 2193 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | |||||| | ||| || Sbjct 2192 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATTGTGTCAGAACTCTCGACT 2133 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||||||||| | ||||| |||||||| |||||| Sbjct 2132 TCCAGGGTGATAGTCTTGCCGGTTAGGGTTTTCACGAATATCTGCATA 2085 >seq153189 Length=17048 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || || ||||| | || ||||| ||||||||||| ||||| Sbjct 14735 CCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCA 14676 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || ||||||||||||||||| |||| ||||| ||||| || || || Sbjct 14675 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 14616 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | ||||||| Sbjct 14615 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACC 14556 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| || ||||| ||||| ||||| || |||||| Sbjct 14555 TCGAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCATA 14508 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || || ||||| | || ||||| ||||||||||| ||||| Sbjct 14963 CCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCA 14904 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || ||||||||||||||||| |||| ||||| ||||| || || || Sbjct 14903 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 14844 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | ||| || Sbjct 14843 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACT 14784 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | |||||||| || | || || ||||| || |||||| Sbjct 14783 TCAAGGGTGATTGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCATA 14736 >seq54724 Length=7877 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| ||||||||||| ||||| || || ||| | Sbjct 2101 CCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCC 2042 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| ||||| || || || ||| |||||| | ||||| || ||||| Sbjct 2041 AGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGG 1982 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || ||| | | || | ||||| | | ||| ||| Sbjct 1981 ATACCTTCTTTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACC 1922 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || |||||||| || || || || || |||||| Sbjct 1921 TCGAGGGTAATGGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCATA 1874 >seq210337 Length=1863 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||||| || ||||| || |||||||| |||||| | Sbjct 586 CCTCCACGAAGACGCAACACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCC 645 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || |||||||| |||||||| |||| || | ||||||||| ||||| Sbjct 646 AAAGTCCGACCATCCTCGAGCTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGG 705 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | ||||||| Sbjct 706 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACATTGTCAATCGTGTCTGAGCTCTCCACC 765 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || || ||||| | || || ||||| || |||||| Sbjct 766 TCAAGAGTAATGGTTTTACCGGTAAGGGTCTTCACGAAAATCTGCATA 813 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || || | ||| ||||| | || ||||| || || |||||||| || | Sbjct 1498 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCC 1557 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| || |||||||| || |||||| ||||||||||| ||||| Sbjct 1558 AAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGA 1617 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||| || | | || | ||||| | | ||| ||| Sbjct 1618 ATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 1677 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | |||||| |||||||||||||| Sbjct 1678 TCGAGAGTTATGGTCTTTCCAGTAAGCGTTTTCACGAATATTTGCAT 1724 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || |||| || || ||||| ||||| || ||||| | Sbjct 358 CCACCACGAAGACGAAGAACCAAATGAAGAGTCGATTCTTTCTGAATATTGTAATCCGCC 417 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || |||||||||||||| |||| || | || || || ||||| Sbjct 418 AAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 477 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | || | | || | ||||| | | ||| || Sbjct 478 ATCCCTTCTTTGTC-CTGAATTTTAGCCTTCACATTATCAATAGTGTCCGAGCTCTCAAC 536 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||| ||||| || || || || |||||||| Sbjct 537 CTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 584 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | || ||||||||||| ||||| ||||| Sbjct 1042 CCACCTCTGAGACGAAGTACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATCCGCA 1101 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| || || ||||| ||| |||| || | |||||||| ||||| Sbjct 1102 AGAGTACGTCCA-TCTTCAAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGG 1160 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| || || | | || | || |||| | ||| || Sbjct 1161 GATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTATCGGAGCTCTCAAC 1220 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | || || || || | || || || || ||||||||| Sbjct 1221 CTCAAGAGTAATGGTTTTCCCAGTGAGAGTCTTGACAAAGATTTGCATA 1269 >seq117562 Length=2070 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || || | ||| ||||| | || ||||| || || |||||||| || | Sbjct 1229 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCC 1170 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| ||||||||||| || |||||| ||||||||||| ||||| Sbjct 1169 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGA 1110 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||| || | | || | ||||| | | ||| ||| Sbjct 1109 ATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 1050 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | ||||| |||||||||||||| Sbjct 1049 TCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTCACGAATATTTGCAT 1003 >seq50902 Length=6384 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || || || | ||| | ||| | ||||| || |||||||| |||||||| || || ||| Sbjct 4582 CCACCACGGAGACGGAGAACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCCGCT 4523 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | |||||||||||||| || ||| |||| || | || || || ||||| Sbjct 4522 AAT-GTCCGACCATCTTCGAGCTGTTTTCCCGCAAAGATTAGCCTCTGTTGGTCCGGAGG 4464 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || |||||||| || ||| | || ||||| | | || | ||| || | | || | Sbjct 4463 GATCCCTTCTTTATC-TTGAATCTTCGTTTTCACATTGTCAATTGTATCCGAGCTTTCGA 4405 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || | || || || ||||| || || |||||||| ||||| Sbjct 4404 CCTCAAGAGTGATGGTTTTACCCGTCAAAGTCTTGACGAATATCTGCAT 4356 >seq214945 Length=15579 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||||| || || || ||||| || || |||||| | Sbjct 7763 CCACCACGAAGACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATATTGTAATCGGCC 7822 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| |||||||||||||| ||| ||||||| | ||| | || | ||| Sbjct 7823 AAAGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATCAGGCTTTGTTTGTCAGAAGGG 7882 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 | |||||||| || ||| || || | | ||| || ||||| | | || ||| Sbjct 7883 ACTCCTTCTTTCTCTTGGATCTTGGCCTTGACGTTTTCTACGGTGTCCGAGCTTTCGACC 7942 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| || | || |||||||| |||||||| Sbjct 7943 TCGAGGGATATGGTCTTGCCTGTAAGAGTCTTTACGAAGATTTGCAT 7989 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | ||| ||||| | | ||||| ||||| ||||| ||||| | Sbjct 5488 CCTCCTCTTAACCTGAGAACCAAGTGGAGAGCTGACTCCTTTTGGATGTTGTAATCAGCC 5547 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| ||||||||||| ||| ||||||| | || || || | ||| Sbjct 5548 AAAGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATCAGTCTCTGTTGGTCTGAAGGG 5607 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 | |||||||| || ||| || || | | ||| |||||||| | | || ||| Sbjct 5608 ACTCCTTCTTTCTCTTGGATCTTGGCCTTGACGTTTTCTACTGTGTCCGAGCTTTCGACC 5667 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 || | || | |||||||| | | || |||||||| |||||||| || Sbjct 5668 TCGAGGGATATGGTCTTGCCTTTAAGAGTCTTTACGAAGATTTGCATCGC 5717 >seq236154 Length=204 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | |||||| || ||||||| ||||| || || || ||||| || ||| Sbjct 35 CCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAA 94 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| |||||| || || || || ||| |||||| |||||| || || || || Sbjct 95 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 154 Query 139658 ATGCCTTCTTTGTC 139671 || ||||||||||| Sbjct 155 ATACCTTCTTTGTC 168 >seq185166 Length=13725 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 6/123 (5%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAG- 139609 ||| || ||||||| || |||||||| || ||||| ||||| ||| || | |||| Sbjct 3777 CAAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCCGCTAAT---GTTCGACC 3721 Query 139610 -TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| || |||||||||||| |||||| | || ||||| || ||||| || ||||| Sbjct 3720 ATCTTCTAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGTATTCCCTCTTT 3661 Query 139669 GTC 139671 ||| Sbjct 3660 GTC 3658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494406972617600