Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq146431 183 4e-41 seq27195 149 9e-31 seq161916 111 2e-19 seq205226 104 3e-17 seq100826 89.7 7e-13 seq191921 87.8 3e-12 >seq146431 Length=15796 Score = 183 bits (202), Expect = 4e-41 Identities = 401/593 (68%), Gaps = 6/593 (1%) Strand=Plus/Plus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||||||| |||||||| ||||| | ||| ||||||| || | |||||| || || Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 || | ||| ||||| || ||||| || |||||||| || || || || || || Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAG 4241 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTC 50132 |||||||| ||||| || || || || || | || || || || | | | | | Sbjct 4242 AAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATC-C 4300 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || ||||| | |||||| | || ||||| |||||||| || ||||| | || Sbjct 4301 ATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTGC 4360 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 || |||| | | | || || ||||||| | |||||||||| || |||||||| Sbjct 4361 GCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTATA 4420 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || ||||| || || ||||| || || |||||||||||||| | || |||| Sbjct 4421 CATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGGA 4480 Query 50313 AATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371 | || || |||| ||| ||||| ||| | |||||| || ||||||||| | Sbjct 4481 GACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGATG 4539 Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTC 50430 | || || || || | || ||||| || || || ||| | | ||| || || | | Sbjct 4540 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCC 4598 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || ||| |||| |||| |||||||||||| | ||||| || ||||| || || Sbjct 4599 CAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 4658 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 || || ||||| | |||||| | | || || || || || ||| ||||| Sbjct 4659 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711 >seq27195 Length=13093 Score = 149 bits (164), Expect = 9e-31 Identities = 572/884 (65%), Gaps = 16/884 (2%) Strand=Plus/Minus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| ||||| ||||| || | || || ||||| |||||||| |||| | || || Sbjct 9523 TTTCTGGTAATCACCAACTCTCTTCTCAAAAAAGTTAGTTTTCCCTTGAAGCGAGATTAA 9464 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| ||||||||||||| || ||| || | || | | || | || | Sbjct 9463 CTCCATCCAATCAAACGGATTAGTCACACCGTACACCTTACCATACCCAAGCGCACCCAA 9404 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 49846 | |||||||| ||||| || ||||| |||||| ||||| |||||| |||| || Sbjct 9403 AAGCCTATCCGCAACAAACTCAATATACTCACTCATCAATTCACGATTCATCCCTACCAA 9344 Query 49847 GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 49904 || ||||| || |||| | ||| ||| || || || || || | Sbjct 9343 CGCGCAC-GGAAGCGCGTCGCAC--ACAAACTCTCTCTCGATCTCCACAGCGTCGCACAC 9287 Query 49905 AATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACAT 49962 ||| || | || || || || | | | | | || ||| || | ||| || Sbjct 9286 AATCGACTTCACTCGCTCCTCCGTCAGCTTCGTTCGGAGAAGTGTGTAGA--TCAGGCAA 9229 Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 |||||||||||||| | || ||||||| |||| ||||| || || || | || Sbjct 9228 GCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCA 9169 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082 ||||| || || || ||||| ||||| || || || || || || |||||||| Sbjct 9168 GGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATA 9109 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTATCCA 50141 ||||| || || || || || | || || | || | | | | ||| ||||| Sbjct 9108 CCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATC-CATCGATCCA 9050 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 | |||||| | || ||||| || ||||| || ||||| || || ||||| Sbjct 9049 TGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAGAG 8990 Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261 || | | | || || ||||||| | || ||||| | | ||||||||||| || || Sbjct 8989 ATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTCAGA 8930 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321 ||| || || ||||| || ||||| |||||||||||| | || || | | || || Sbjct 8929 ATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGACTTGTAC 8870 Query 50322 TTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380 |||| ||| ||||| ||| | ||| || || ||||||||| || || || | Sbjct 8869 ATCTG-ACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGAAGA 8811 Query 50381 ACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCCAATCATTG 50439 | || | || ||||| || || || ||| | | ||| || || | ||| ||| Sbjct 8810 AAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCTCCCAGTCACGT 8752 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 |||| |||| |||||||||||| | ||||| || ||||| || || || || ||| Sbjct 8751 CCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTGTAC 8692 Query 50500 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 || | |||||| | | || || || || || ||| ||||| Sbjct 8691 ATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648 >seq161916 Length=396 Score = 111 bits (122), Expect = 2e-19 Identities = 155/213 (73%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 79290 TGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAA 79349 ||||||| || | | ||||| ||| | ||||| |||||||||||||| || ||||| Sbjct 361 TGATCCTTGATAGGATGAATAAGTTCCATATTTTTCAGCTAATTCACAACTAGCTTCTAA 302 Query 79350 TGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA-T 79408 || || ||||| | || || || || | ||| || | | ||| ||| ||| | Sbjct 301 CGCACCATAATACAAAGTCTCAAATATTTGTAAATTAAGCTTTCGTGATTC-AGGTGAGC 243 Query 79409 CAAATGGATAATTTAA-----GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 |||||||| ||| | | ||||||||| |||||||| ||||||| ||||||||| Sbjct 242 CAAATGGA-AATCTCATCATTGAGAATAAA----TCTGCTAACCCTTGAATACCAATACC 188 Query 79464 GATAGGTCTATGTCTCTTATTAGAAATTTCAGC 79496 ||||| | |||||| ||||||||| |||| || Sbjct 187 AATAGGACGATGTCTTTTATTAGAAGTTTCTGC 155 >seq205226 Length=4968 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | || || | |||| | || | || ||| |||| |||||| Sbjct 4506 TCCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 4565 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||| ||||| || || ||||||| |||||| | || |||||||| ||| || Sbjct 4566 ATTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGA 4625 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || |||| || || || ||| ||||||||||| || Sbjct 4626 AACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAAT 4685 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| |||| | ||||| ||||| Sbjct 4686 TCCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727 >seq100826 Length=54576 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | ||| || | ||| | || | || ||| |||| |||||| Sbjct 29539 TCCTCCTTGATCAACATACCGAGCAGTATCATTGAATACACGCAGCATCGGAACAATACC 29598 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||| ||||| || || ||||| |||||| | || ||||||||| ||| || Sbjct 29599 ATTAGATTCTCCATTAGTGCCACGAATATAACTTCCAGTTGCGCGAATATTATGAATCGA 29658 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || |||| || || || ||| || || ||||| || Sbjct 29659 AACACCAATACCACCAGCTGATTTACTTATAGCAGCACACTCTTTCAAAGTGTCATATAT 29718 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| |||| | ||||| ||||| Sbjct 29719 CCCCTCGATGCTATCATCCTTCATACAGACAAGAAAGCAGCT 29760 >seq191921 Length=6033 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 80136 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGC 80195 ||||||||||| ||||||||| || || |||||||| || || || |||||| | || Sbjct 4145 CAACATTGGAACAATACCATTAGACGTTCCATTGGTGCCTCGAATGTAACTTCCAGTTGC 4204 Query 80196 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255 ||| |||||| || ||| | ||| || || || || ||| || | || || Sbjct 4205 ACGGATATTATGAACTGAAACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTC 4264 Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATG 80298 ||| | || ||||| |||||||| ||||| ||||| ||||| Sbjct 4265 TTTGAGTGTTTCATATATGCCCTCAATGCTGTCATCTTTCATG 4307 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 79425 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 ||| ||||| || ||||| | ||||| ||||||||||| ||||||||||||| | | || Sbjct 2808 GAGGATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTATGTCGCATGTT 2867 Query 79485 AGAAATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 || ||| || ||| | |||||| ||||| | ||||||||| || |||||||| Sbjct 2868 TGACGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATAATCTTGTTGAGATT 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715869530813920