Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq146431 183 4e-41
seq27195 149 9e-31
seq161916 111 2e-19
seq205226 104 3e-17
seq100826 89.7 7e-13
seq191921 87.8 3e-12
>seq146431
Length=15796
Score = 183 bits (202), Expect = 4e-41
Identities = 401/593 (68%), Gaps = 6/593 (1%)
Strand=Plus/Plus
Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013
|||||||| |||||||| ||||| | ||| ||||||| || | |||||| || ||
Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181
Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073
|| | ||| ||||| || ||||| || |||||||| || || || || || ||
Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAG 4241
Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTC 50132
|||||||| ||||| || || || || || | || || || || | | | | |
Sbjct 4242 AAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATC-C 4300
Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192
|| ||||| | |||||| | || ||||| |||||||| || ||||| | ||
Sbjct 4301 ATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTGC 4360
Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252
|| |||| | | | || || ||||||| | |||||||||| || ||||||||
Sbjct 4361 GCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTATA 4420
Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312
||| || ||||| || || ||||| || || |||||||||||||| | || ||||
Sbjct 4421 CATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGGA 4480
Query 50313 AATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371
| || || |||| ||| ||||| ||| | |||||| || ||||||||| |
Sbjct 4481 GACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGATG 4539
Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTC 50430
| || || || || | || ||||| || || || ||| | | ||| || || | |
Sbjct 4540 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCC 4598
Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490
|| ||| |||| |||| |||||||||||| | ||||| || ||||| || ||
Sbjct 4599 CAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 4658
Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543
|| || ||||| | |||||| | | || || || || || ||| |||||
Sbjct 4659 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711
>seq27195
Length=13093
Score = 149 bits (164), Expect = 9e-31
Identities = 572/884 (65%), Gaps = 16/884 (2%)
Strand=Plus/Minus
Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727
||| ||||| ||||| || | || || ||||| |||||||| |||| | || ||
Sbjct 9523 TTTCTGGTAATCACCAACTCTCTTCTCAAAAAAGTTAGTTTTCCCTTGAAGCGAGATTAA 9464
Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787
||||| ||||||||||||| || ||| || | || | | || | || |
Sbjct 9463 CTCCATCCAATCAAACGGATTAGTCACACCGTACACCTTACCATACCCAAGCGCACCCAA 9404
Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 49846
| |||||||| ||||| || ||||| |||||| ||||| |||||| |||| ||
Sbjct 9403 AAGCCTATCCGCAACAAACTCAATATACTCACTCATCAATTCACGATTCATCCCTACCAA 9344
Query 49847 GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 49904
|| ||||| || |||| | ||| ||| || || || || || |
Sbjct 9343 CGCGCAC-GGAAGCGCGTCGCAC--ACAAACTCTCTCTCGATCTCCACAGCGTCGCACAC 9287
Query 49905 AATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACAT 49962
||| || | || || || || | | | | | || ||| || | ||| ||
Sbjct 9286 AATCGACTTCACTCGCTCCTCCGTCAGCTTCGTTCGGAGAAGTGTGTAGA--TCAGGCAA 9229
Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022
|||||||||||||| | || ||||||| |||| ||||| || || || | ||
Sbjct 9228 GCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCA 9169
Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082
||||| || || || ||||| ||||| || || || || || || ||||||||
Sbjct 9168 GGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATA 9109
Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTATCCA 50141
||||| || || || || || | || || | || | | | | ||| |||||
Sbjct 9108 CCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATC-CATCGATCCA 9050
Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201
| |||||| | || ||||| || ||||| || ||||| || || |||||
Sbjct 9049 TGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAGAG 8990
Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261
|| | | | || || ||||||| | || ||||| | | ||||||||||| || ||
Sbjct 8989 ATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTCAGA 8930
Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321
||| || || ||||| || ||||| |||||||||||| | || || | | || ||
Sbjct 8929 ATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGACTTGTAC 8870
Query 50322 TTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380
|||| ||| ||||| ||| | ||| || || ||||||||| || || || |
Sbjct 8869 ATCTG-ACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGAAGA 8811
Query 50381 ACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCCAATCATTG 50439
| || | || ||||| || || || ||| | | ||| || || | ||| |||
Sbjct 8810 AAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCTCCCAGTCACGT 8752
Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499
|||| |||| |||||||||||| | ||||| || ||||| || || || || |||
Sbjct 8751 CCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTGTAC 8692
Query 50500 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543
|| | |||||| | | || || || || || ||| |||||
Sbjct 8691 ATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648
>seq161916
Length=396
Score = 111 bits (122), Expect = 2e-19
Identities = 155/213 (73%), Gaps = 12/213 (6%)
Strand=Plus/Minus
Query 79290 TGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAA 79349
||||||| || | | ||||| ||| | ||||| |||||||||||||| || |||||
Sbjct 361 TGATCCTTGATAGGATGAATAAGTTCCATATTTTTCAGCTAATTCACAACTAGCTTCTAA 302
Query 79350 TGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA-T 79408
|| || ||||| | || || || || | ||| || | | ||| ||| ||| |
Sbjct 301 CGCACCATAATACAAAGTCTCAAATATTTGTAAATTAAGCTTTCGTGATTC-AGGTGAGC 243
Query 79409 CAAATGGATAATTTAA-----GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463
|||||||| ||| | | ||||||||| |||||||| ||||||| |||||||||
Sbjct 242 CAAATGGA-AATCTCATCATTGAGAATAAA----TCTGCTAACCCTTGAATACCAATACC 188
Query 79464 GATAGGTCTATGTCTCTTATTAGAAATTTCAGC 79496
||||| | |||||| ||||||||| |||| ||
Sbjct 187 AATAGGACGATGTCTTTTATTAGAAGTTTCTGC 155
>seq205226
Length=4968
Score = 104 bits (114), Expect = 3e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| ||||| | || | || || | |||| | || | || ||| |||| ||||||
Sbjct 4506 TCCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 4565
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| ||| ||||| || || ||||||| |||||| | || |||||||| ||| ||
Sbjct 4566 ATTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGA 4625
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| ||| || || || || |||| || || || ||| ||||||||||| ||
Sbjct 4626 AACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAAT 4685
Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315
||||| ||||||||||| |||| | ||||| |||||
Sbjct 4686 TCCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727
>seq100826
Length=54576
Score = 89.7 bits (98), Expect = 7e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| ||||| | || | ||| || | ||| | || | || ||| |||| ||||||
Sbjct 29539 TCCTCCTTGATCAACATACCGAGCAGTATCATTGAATACACGCAGCATCGGAACAATACC 29598
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| ||| ||||| || || ||||| |||||| | || ||||||||| ||| ||
Sbjct 29599 ATTAGATTCTCCATTAGTGCCACGAATATAACTTCCAGTTGCGCGAATATTATGAATCGA 29658
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| ||| || || || || |||| || || || ||| || || ||||| ||
Sbjct 29659 AACACCAATACCACCAGCTGATTTACTTATAGCAGCACACTCTTTCAAAGTGTCATATAT 29718
Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315
||||| ||||||||||| |||| | ||||| |||||
Sbjct 29719 CCCCTCGATGCTATCATCCTTCATACAGACAAGAAAGCAGCT 29760
>seq191921
Length=6033
Score = 87.8 bits (96), Expect = 3e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 80136 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGC 80195
||||||||||| ||||||||| || || |||||||| || || || |||||| | ||
Sbjct 4145 CAACATTGGAACAATACCATTAGACGTTCCATTGGTGCCTCGAATGTAACTTCCAGTTGC 4204
Query 80196 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255
||| |||||| || ||| | ||| || || || || ||| || | || ||
Sbjct 4205 ACGGATATTATGAACTGAAACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTC 4264
Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATG 80298
||| | || ||||| |||||||| ||||| ||||| |||||
Sbjct 4265 TTTGAGTGTTTCATATATGCCCTCAATGCTGTCATCTTTCATG 4307
Score = 84.2 bits (92), Expect = 3e-11
Identities = 91/118 (77%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 79425 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484
||| ||||| || ||||| | ||||| ||||||||||| ||||||||||||| | | ||
Sbjct 2808 GAGGATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTATGTCGCATGTT 2867
Query 79485 AGAAATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541
|| ||| || ||| | |||||| ||||| | ||||||||| || ||||||||
Sbjct 2868 TGACGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATAATCTTGTTGAGATT 2924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715869530813920
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