Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq146431 122 8e-23
seq27195 105 6e-18
>seq146431
Length=15796
Score = 122 bits (134), Expect = 8e-23
Identities = 369/564 (65%), Gaps = 11/564 (2%)
Strand=Plus/Plus
Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925
|| ||||| || |||||||| || | || || |||| || | |||||| || ||
Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181
Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAA 13985
|||||||| ||||| | ||| ||||| || | ||| || || | | || || ||
Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAG 4241
Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045
||||| || || ||||| ||| || |||| | |||||| |||| | ||| |
Sbjct 4242 AAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAG-----TTTGAG 4296
Query 14046 TTCGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14103
|| || ||||| | ||||||||| || ||| || || | || |||||||| |
Sbjct 4297 ATCCATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGA 4356
Query 14104 TAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA-TAAGTAAG 14162
|| |||| || || ||||||| || | ||||| ||||| | |||| |
Sbjct 4357 CTGCGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGA- 4415
Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA-GCATCTAGC 14221
|||||||| ||||| || || || || || || || ||||| || || || ||| | ||
Sbjct 4416 CTATACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCA-CGCGC 4474
Query 14222 TTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14281
||| || |||||| || || |||| || | |||||| || || || ||
Sbjct 4475 TTCGGAGACTTGTACATCTGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTC 4534
Query 14282 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14341
| || || || || || | | || ||| || |||| | ||| | | |||||| ||
Sbjct 4535 AGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATT 4594
Query 14342 TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401
|| ||| || | || | || ||||||||||| || | ||||| || || |
Sbjct 4595 TTCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTC 4654
Query 14402 AGCTTTTTTATACATTACCCATAT 14425
||||| || ||||| |||| ||
Sbjct 4655 GGCTTTCTTGTACATCTCCCAGAT 4678
>seq27195
Length=13093
Score = 105 bits (116), Expect = 6e-18
Identities = 362/558 (65%), Gaps = 11/558 (2%)
Strand=Plus/Minus
Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931
|| || ||||| || || | ||| || |||| || | |||||||| || |||||
Sbjct 9231 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAAC 9172
Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991
|| ||||| | ||||||||||| | ||| || || | | || ||||| |||||
Sbjct 9171 CCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAG 9112
Query 13992 ATTCCCTCAACTGCA-GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14050
|| || || || ||| || || || | | |||||| | || | | | | || |
Sbjct 9111 ATACCTTCGAC-GCACGCGAAAGCGACGATTCGTTCAGCGAAAG-----TCTGAGATCCA 9058
Query 14051 T--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108
| |||||| | ||||||||| || ||| || | || |||||||| || ||
Sbjct 9057 TCGATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCG 8998
Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168
|| | || || ||||||| || | ||||||||||| | ||| | ||||||
Sbjct 8997 CGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATAC 8938
Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTCCGA 14227
|| ||||| || || || || || || ||||| || || || |||||| | ||||| ||
Sbjct 8937 ATCTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCTTCAGA 8879
Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287
|||||| || || |||| || | ||| || ||| || || ||| ||
Sbjct 8878 GACTTGTACATCTGACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGC 8819
Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347
|| || || || | | || ||| || |||| | ||| | | |||||| || | |||
Sbjct 8818 GGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTCTCCCA 8759
Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407
|| | || | || ||||||||||| || | ||||| || || | |||||
Sbjct 8758 GTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTT 8699
Query 14408 TTTATACATTACCCATAT 14425
|| ||||| |||| ||
Sbjct 8698 CTTGTACATCTCCCAGAT 8681
Score = 82.4 bits (90), Expect = 7e-11
Identities = 126/177 (71%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639
||| || || |||| |||||| || ||||| ||||||||||| |||| || || ||
Sbjct 9523 TTTCTGGTAATCACCAACTCTCTTCTCAAAAAAGTTAGTTTTCCCTTGAAGCGAGATTAA 9464
Query 13640 TTCCATAAAATCAAATGGATTTATTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 13698
||||| ||||||| ||| ||| | ||| |||| ||| || | || || | |
Sbjct 9463 CTCCATCCAATCAAACGGA-TTAGTCACACCGTACACCTTACCATACCCAAGCGCACCCA 9405
Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTA 13755
| ||||| |||| |||||||||||| | | ||| || |||| |||||| ||||
Sbjct 9404 AAAGCCTATCCGCAACAAACTCAATATACTCACTCATCAATTCACGATTCATCCCTA 9348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478125540575200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |