Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq146431 122 8e-23 seq27195 105 6e-18 >seq146431 Length=15796 Score = 122 bits (134), Expect = 8e-23 Identities = 369/564 (65%), Gaps = 11/564 (2%) Strand=Plus/Plus Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925 || ||||| || |||||||| || | || || |||| || | |||||| || || Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181 Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAA 13985 |||||||| ||||| | ||| ||||| || | ||| || || | | || || || Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAG 4241 Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 ||||| || || ||||| ||| || |||| | |||||| |||| | ||| | Sbjct 4242 AAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAG-----TTTGAG 4296 Query 14046 TTCGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14103 || || ||||| | ||||||||| || ||| || || | || |||||||| | Sbjct 4297 ATCCATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGA 4356 Query 14104 TAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA-TAAGTAAG 14162 || |||| || || ||||||| || | ||||| ||||| | |||| | Sbjct 4357 CTGCGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGA- 4415 Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA-GCATCTAGC 14221 |||||||| ||||| || || || || || || || ||||| || || || ||| | || Sbjct 4416 CTATACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCA-CGCGC 4474 Query 14222 TTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14281 ||| || |||||| || || |||| || | |||||| || || || || Sbjct 4475 TTCGGAGACTTGTACATCTGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTC 4534 Query 14282 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14341 | || || || || || | | || ||| || |||| | ||| | | |||||| || Sbjct 4535 AGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATT 4594 Query 14342 TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401 || ||| || | || | || ||||||||||| || | ||||| || || | Sbjct 4595 TTCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTC 4654 Query 14402 AGCTTTTTTATACATTACCCATAT 14425 ||||| || ||||| |||| || Sbjct 4655 GGCTTTCTTGTACATCTCCCAGAT 4678 >seq27195 Length=13093 Score = 105 bits (116), Expect = 6e-18 Identities = 362/558 (65%), Gaps = 11/558 (2%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || || ||||| || || | ||| || |||| || | |||||||| || ||||| Sbjct 9231 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAAC 9172 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| | ||||||||||| | ||| || || | | || ||||| ||||| Sbjct 9171 CCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAG 9112 Query 13992 ATTCCCTCAACTGCA-GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14050 || || || || ||| || || || | | |||||| | || | | | | || | Sbjct 9111 ATACCTTCGAC-GCACGCGAAAGCGACGATTCGTTCAGCGAAAG-----TCTGAGATCCA 9058 Query 14051 T--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | |||||| | ||||||||| || ||| || | || |||||||| || || Sbjct 9057 TCGATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCG 8998 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 || | || || ||||||| || | ||||||||||| | ||| | |||||| Sbjct 8997 CGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATAC 8938 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTCCGA 14227 || ||||| || || || || || || ||||| || || || |||||| | ||||| || Sbjct 8937 ATCTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCA-CGCGCTTCAGA 8879 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 |||||| || || |||| || | ||| || ||| || || ||| || Sbjct 8878 GACTTGTACATCTGACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGC 8819 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347 || || || || | | || ||| || |||| | ||| | | |||||| || | ||| Sbjct 8818 GGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTCTCCCA 8759 Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407 || | || | || ||||||||||| || | ||||| || || | ||||| Sbjct 8758 GTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTT 8699 Query 14408 TTTATACATTACCCATAT 14425 || ||||| |||| || Sbjct 8698 CTTGTACATCTCCCAGAT 8681 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| || || |||| |||||| || ||||| ||||||||||| |||| || || || Sbjct 9523 TTTCTGGTAATCACCAACTCTCTTCTCAAAAAAGTTAGTTTTCCCTTGAAGCGAGATTAA 9464 Query 13640 TTCCATAAAATCAAATGGATTTATTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 13698 ||||| ||||||| ||| ||| | ||| |||| ||| || | || || | | Sbjct 9463 CTCCATCCAATCAAACGGA-TTAGTCACACCGTACACCTTACCATACCCAAGCGCACCCA 9405 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTA 13755 | ||||| |||| |||||||||||| | | ||| || |||| |||||| |||| Sbjct 9404 AAAGCCTATCCGCAACAAACTCAATATACTCACTCATCAATTCACGATTCATCCCTA 9348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478125540575200