Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq146431 131 2e-25 seq27195 122 8e-23 >seq146431 Length=15796 Score = 131 bits (144), Expect = 2e-25 Identities = 369/563 (66%), Gaps = 9/563 (2%) Strand=Plus/Plus Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 || ||||| || |||||||| || | || || |||| || | |||||| || || Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181 Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 |||||||| ||||| | ||| ||||| || | ||| || || | | ||| || || Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAG 4241 Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833 ||||| || || ||||| ||| || |||| | |||||| |||| | ||| | Sbjct 4242 AAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAG-----TTTGAG 4296 Query 13834 TTTGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGA 13891 | || ||||| | ||||||||| || ||| || || | || |||||||||| Sbjct 4297 ATCCATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGA 4356 Query 13892 TTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA-TAAGTAAG 13950 ||| ||||| ||| || ||||||| || | ||||| ||||| | |||| | Sbjct 4357 CTGCGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGA- 4415 Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 |||||||| ||||| || || || || || || || ||||| || || || | ||| Sbjct 4416 CTATACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCT 4475 Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 || || |||||| || || |||| || | ||||| || || || ||| Sbjct 4476 TCGGAGACTTGTACATCTGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCA 4535 Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14130 || || || || || | | || ||| || |||| | ||| | | |||||| ||| Sbjct 4536 GATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTT 4595 Query 14131 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14190 | ||| || | || | || ||||||||||| || | ||||| || || | Sbjct 4596 TCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCG 4655 Query 14191 GCTTTTTTATACATTACCCATAT 14213 ||||| || ||||| |||| || Sbjct 4656 GCTTTCTTGTACATCTCCCAGAT 4678 >seq27195 Length=13093 Score = 122 bits (134), Expect = 8e-23 Identities = 543/852 (64%), Gaps = 15/852 (2%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| || || |||| |||||| || ||||||||||||||||| |||| || || || Sbjct 9523 TTTCTGGTAATCACCAACTCTCTTCTCAAAAAAGTTAGTTTTCCCTTGAAGCGAGATTAA 9464 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| || ||||| || ||| |||| ||| || | || || | | Sbjct 9463 CTCCATCCAATCAAACGGATTAGTC-ACACCGTACACCTTACCATACCCAAGCGCACCCA 9405 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | | ||||| |||| |||||||||||| | | ||| || |||| |||||| |||| | Sbjct 9404 AAAGCCTATCCGCAACAAACTCAATATACTCACTCATCAATTCACGATTCATCCCTACCA 9345 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 |||| | | ||| ||| | || || |||||| ||| | || Sbjct 9344 ACGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCCACAGCGTCGCACACAA 9285 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACGC 13664 | ||| | || | | || | || ||| || | | || | || || Sbjct 9284 TCGACTTCACTCGCTCCTCCGTC--AGCTTCGTTCGGAGAAGTGTGTAGATCAGGCAAGC 9227 Query 13665 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13724 ||||| || || | ||| || |||| || | |||||||| || ||||| || || Sbjct 9226 GAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCAGG 9167 Query 13725 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 13784 ||| | ||||||||||| | ||| || || | | ||| ||||| ||||| || || Sbjct 9166 CATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATACC 9107 Query 13785 CTCAACTGCA-GCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--AT 13841 || || ||| || || || | | |||||| | || | | | | | || || Sbjct 9106 TTCGAC-GCACGCGAAAGCGACGATTCGTTCAGCGAAAG-----TCTGAGATCCATCGAT 9053 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 |||| | ||||||||| || ||| || | || |||||||||||||| ||| Sbjct 9052 CCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAA 8993 Query 13902 TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 13961 | ||| || ||||||| || | ||||||||||| | ||| | |||||||| || Sbjct 8992 GAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTC 8933 Query 13962 AGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14021 ||| || || || || || || ||||| || || || ||| | ||||| || ||| Sbjct 8932 AGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGACTTG 8873 Query 14022 TACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAA 14081 ||| || || |||| || | || || ||| || || ||| || || || Sbjct 8872 TACATCTGACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGAA 8813 Query 14082 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGC 14141 || || | | || ||| || |||| | ||| | | |||||| || | ||| || Sbjct 8812 GAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTCTCCCAGTCACG 8753 Query 14142 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 | || | || ||||||||||| || | ||||| || || | ||||| || || Sbjct 8752 TCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTGTA 8693 Query 14202 CATTACCCATAT 14213 ||| |||| || Sbjct 8692 CATCTCCCAGAT 8681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476990145901920