Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq167623 105 5e-18
seq78792 105 5e-18
seq26661 95.1 9e-15
seq66861 93.3 3e-14
seq54724 93.3 3e-14
seq26664 93.3 3e-14
seq91578 89.7 4e-13
seq214945 87.8 1e-12
seq117562 84.2 2e-11
>seq167623
Length=7090
Score = 105 bits (116), Expect = 5e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
||||| || | |||||||||| | ||||| |||| || | |||||| ||||| |||
Sbjct 2583 TCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTCTTCGAGTTGTTTTCCGGCGAAA 2524
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038
||||||||||| ||||| | || | ||||| || || |||| | ||||||| ||
Sbjct 2523 ATCAATCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTGACATTG 2464
Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098
| | || ||| | ||||| || | ||||| || || |||||||| ||||||||
Sbjct 2463 TCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCACG 2404
Query 43099 AAAATTTGCAT 43109
|| || |||||
Sbjct 2403 AAGATCTGCAT 2393
>seq78792
Length=14290
Score = 105 bits (116), Expect = 5e-18
Identities = 139/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
||||| || | |||||||||| | ||| | | |||| ||||||||||| ||||||||
Sbjct 11633 TCCTTCTGGATGTTGTAATCGGCGAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAG 11574
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038
||||| || || || || | || | ||||| || || |||| | |||| || ||
Sbjct 11573 ATCAAACGTTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTG 11514
Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098
| | |||||| || || || |||| ||||| || || || ||||| ||||||||
Sbjct 11513 TCGATTGTGTCCGAAGATTCAACCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACG 11454
Query 43099 AAAATTTGCATTT 43111
|| || |||||||
Sbjct 11453 AAGATCTGCATTT 11441
>seq26661
Length=2801
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || |||| |||||| || | || |||||||| | |||||||| | |
Sbjct 1172 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCCGCC 1113
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| ||||| | || |||||||| || || ||||| || | | ||| ||||| | ||
Sbjct 1112 AAGGTACGGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 1053
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| |||||| || || |||| | || || || | | ||||| | || ||
Sbjct 1052 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACC 993
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || ||||| |||||||| ||||||||||| || || |||||
Sbjct 992 TCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 946
>seq66861
Length=20397
Score = 93.3 bits (102), Expect = 3e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
||||| || | ||||| |||| | |||||| |||| || | |||||| ||||| |||
Sbjct 17450 TCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCAAGTTGTTTTCCGGCGAAA 17391
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038
|||||||| || ||||| | || | ||||| || || |||| | | ||||| ||
Sbjct 17390 ATCAATCGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTGACATTG 17331
Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098
| | || ||| | || || || | |||||| || || || ||||| ||||||||
Sbjct 17330 TCGATCGTATCGGATGATTCAACCTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCACG 17271
Query 43099 AAAATTTGCATTTT 43112
|| || ||||| ||
Sbjct 17270 AAGATCTGCATCTT 17257
>seq54724
Length=7877
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || |||| ||||| || | ||| ||||| || | |||||||| | |
Sbjct 1645 CCACCACGAAGCCTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCC 1586
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| ||||| | || ||||| || || ||||| || ||||||| ||| ||||| | ||
Sbjct 1585 AAGGTACGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGA 1526
Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| ||||| || || |||| || | || || || | | || || | || ||
Sbjct 1525 ATTCCTTCCTTATC-CTGAATCTTAGCCTTAACGTTGTCGATCGTATCAGAACTTTCCAC 1467
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || ||||| |||||||| |||||||||||||| || |||||
Sbjct 1466 CTCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 1419
>seq26664
Length=6282
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
||||| || | ||||| |||| | |||||| |||| || | |||||| || || ||
Sbjct 5682 TCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTGTTTTCCCGCGAAG 5741
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038
||||||||||| || || | || | ||||| || || |||| | ||||||| ||
Sbjct 5742 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTGACATTG 5801
Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098
| | || ||| | ||||| || | ||||| || || |||||||| ||||||||
Sbjct 5802 TCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCACG 5861
Query 43099 AAAATTTGCAT 43109
|| || |||||
Sbjct 5862 AAGATCTGCAT 5872
>seq91578
Length=16840
Score = 89.7 bits (98), Expect = 4e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
||||| || | ||||| |||| | |||||| |||| || | |||||| ||||| |||
Sbjct 278 TCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTGTTTTCCGGCGAAA 337
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038
|||||||| |||||||| | || | ||||| || || |||| | ||||| ||
Sbjct 338 ATCAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTG 397
Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098
| | || || | || || || | |||||| || || || ||||| ||||||||
Sbjct 398 TCGATCGTATCCGATGATTCAACCTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCACG 457
Query 43099 AAAATTTGCATTTT 43112
|| || ||||| ||
Sbjct 458 AAGATCTGCATCTT 471
>seq214945
Length=15579
Score = 87.8 bits (96), Expect = 1e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
|||||||| | ||||||||||| ||| ||||| |||| || | ||||| ||||||||
Sbjct 7799 TCCTTTTGGATATTGTAATCGGCCAAAGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAG 7858
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038
|||| | |||| || | || || |||||||| || |||| | ||||| |
Sbjct 7859 ATCAGGCTTTGTTTGTCAGAAGGGACTCCTTCTTTCTCTTGGATCTTGGCCTTGACGTTT 7918
Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097
| || ||||| | ||| ||||| || | | ||| || || || || ||||| || ||
Sbjct 7919 TCTACGGTGTC-CGAGCTTTCGACCTCGAGGGATATGGTCTTGCCTGTAAGAGTCTTTAC 7977
Query 43098 AAAAATTTGCAT 43109
|| ||||||||
Sbjct 7978 GAAGATTTGCAT 7989
>seq117562
Length=2070
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
|||||| || | || || || | ||| ||||| | || || | ||||| ||||| ||
Sbjct 1194 CTCCTTCTGGATGTTATAGTCAGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAA 1135
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037
|||||||| || ||||| | || | ||||| || || |||| | ||||| |
Sbjct 1134 GATCAATCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTT 1075
Query 43038 GCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096
| | | ||||| ||| |||||| || | ||||| || ||||| || ||||||||||
Sbjct 1074 GTCGATGGTGTCAG-AGCTCTCGACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTCA 1016
Query 43097 CAAAAATTTGCAT 43109
| || ||||||||
Sbjct 1015 CGAATATTTGCAT 1003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380127539755224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |