Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq167623 105 5e-18 seq78792 105 5e-18 seq26661 95.1 9e-15 seq66861 93.3 3e-14 seq54724 93.3 3e-14 seq26664 93.3 3e-14 seq91578 89.7 4e-13 seq214945 87.8 1e-12 seq117562 84.2 2e-11 >seq167623 Length=7090 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||||||| | ||||| |||| || | |||||| ||||| ||| Sbjct 2583 TCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTCTTCGAGTTGTTTTCCGGCGAAA 2524 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||||||| ||||| | || | ||||| || || |||| | ||||||| || Sbjct 2523 ATCAATCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTGACATTG 2464 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | || ||| | ||||| || | ||||| || || |||||||| |||||||| Sbjct 2463 TCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCACG 2404 Query 43099 AAAATTTGCAT 43109 || || ||||| Sbjct 2403 AAGATCTGCAT 2393 >seq78792 Length=14290 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||||||| | ||| | | |||| ||||||||||| |||||||| Sbjct 11633 TCCTTCTGGATGTTGTAATCGGCGAGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAG 11574 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| || || || || | || | ||||| || || |||| | |||| || || Sbjct 11573 ATCAAACGTTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTG 11514 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | |||||| || || || |||| ||||| || || || ||||| |||||||| Sbjct 11513 TCGATTGTGTCCGAAGATTCAACCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACG 11454 Query 43099 AAAATTTGCATTT 43111 || || ||||||| Sbjct 11453 AAGATCTGCATTT 11441 >seq26661 Length=2801 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || |||| |||||| || | || |||||||| | |||||||| | | Sbjct 1172 CCACCACGAAGCCTTAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCCGCC 1113 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || |||||||| || || ||||| || | | ||| ||||| | || Sbjct 1112 AAGGTACGGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 1053 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | || || || | | ||||| | || || Sbjct 1052 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACC 993 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| ||||||||||| || || ||||| Sbjct 992 TCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 946 >seq66861 Length=20397 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||| |||| | |||||| |||| || | |||||| ||||| ||| Sbjct 17450 TCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCAAGTTGTTTTCCGGCGAAA 17391 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||||||| || ||||| | || | ||||| || || |||| | | ||||| || Sbjct 17390 ATCAATCGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTGACATTG 17331 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | || ||| | || || || | |||||| || || || ||||| |||||||| Sbjct 17330 TCGATCGTATCGGATGATTCAACCTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCACG 17271 Query 43099 AAAATTTGCATTTT 43112 || || ||||| || Sbjct 17270 AAGATCTGCATCTT 17257 >seq54724 Length=7877 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || |||| ||||| || | ||| ||||| || | |||||||| | | Sbjct 1645 CCACCACGAAGCCTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCC 1586 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||| || || ||||| || ||||||| ||| ||||| | || Sbjct 1585 AAGGTACGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGA 1526 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| || | || || || | | || || | || || Sbjct 1525 ATTCCTTCCTTATC-CTGAATCTTAGCCTTAACGTTGTCGATCGTATCAGAACTTTCCAC 1467 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| |||||||||||||| || ||||| Sbjct 1466 CTCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 1419 >seq26664 Length=6282 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||| |||| | |||||| |||| || | |||||| || || || Sbjct 5682 TCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTGTTTTCCCGCGAAG 5741 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||||||| || || | || | ||||| || || |||| | ||||||| || Sbjct 5742 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTGACATTG 5801 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | || ||| | ||||| || | ||||| || || |||||||| |||||||| Sbjct 5802 TCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCACG 5861 Query 43099 AAAATTTGCAT 43109 || || ||||| Sbjct 5862 AAGATCTGCAT 5872 >seq91578 Length=16840 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||| |||| | |||||| |||| || | |||||| ||||| ||| Sbjct 278 TCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCGAGTTGTTTTCCGGCGAAA 337 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||||||| |||||||| | || | ||||| || || |||| | ||||| || Sbjct 338 ATCAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTG 397 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | || || | || || || | |||||| || || || ||||| |||||||| Sbjct 398 TCGATCGTATCCGATGATTCAACCTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCACG 457 Query 43099 AAAATTTGCATTTT 43112 || || ||||| || Sbjct 458 AAGATCTGCATCTT 471 >seq214945 Length=15579 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||||||||| ||| ||||| |||| || | ||||| |||||||| Sbjct 7799 TCCTTTTGGATATTGTAATCGGCCAAAGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAG 7858 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| | |||| || | || || |||||||| || |||| | ||||| | Sbjct 7859 ATCAGGCTTTGTTTGTCAGAAGGGACTCCTTCTTTCTCTTGGATCTTGGCCTTGACGTTT 7918 Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | || ||||| | ||| ||||| || | | ||| || || || || ||||| || || Sbjct 7919 TCTACGGTGTC-CGAGCTTTCGACCTCGAGGGATATGGTCTTGCCTGTAAGAGTCTTTAC 7977 Query 43098 AAAAATTTGCAT 43109 || |||||||| Sbjct 7978 GAAGATTTGCAT 7989 >seq117562 Length=2070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | || || || | ||| ||||| | || || | ||||| ||||| || Sbjct 1194 CTCCTTCTGGATGTTATAGTCAGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAA 1135 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||||| || ||||| | || | ||||| || || |||| | ||||| | Sbjct 1134 GATCAATCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTT 1075 Query 43038 GCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | | | ||||| ||| |||||| || | ||||| || ||||| || |||||||||| Sbjct 1074 GTCGATGGTGTCAG-AGCTCTCGACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTCA 1016 Query 43097 CAAAAATTTGCAT 43109 | || |||||||| Sbjct 1015 CGAATATTTGCAT 1003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380127539755224