Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq146431 196 6e-45 seq27195 168 9e-37 seq205226 113 6e-20 >seq146431 Length=15796 Score = 196 bits (216), Expect = 6e-45 Identities = 404/593 (68%), Gaps = 6/593 (1%) Strand=Plus/Plus Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 |||||||| |||||||| ||||| | ||| || |||| || |||||||| || || Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177 || | ||| ||||| || ||||| || |||||||| || || || || | | | || || Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAA-CAGAAGCTACCTGA 4240 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237 |||||||| ||||| || || || || | | || || || || | | Sbjct 4241 GAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATCC 4300 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || ||||| | |||||| | || ||||| |||||||| || ||||| | || Sbjct 4301 ATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTGC 4360 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 || |||| | | | || || ||||||| | || ||||||| || |||||||| Sbjct 4361 GCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTATA 4420 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || ||||| || || ||||| || || |||||||||||||| | || |||| Sbjct 4421 CATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGGA 4480 Query 42418 AACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 || ||||| |||| ||| ||||| ||| | ||||||| || ||||||||| | Sbjct 4481 GACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGATG 4539 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATTC 42535 | || || || || | || ||||| || || | ||| |||| ||| | || | | Sbjct 4540 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCC 4598 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || ||| |||| |||| |||||||||||| | ||||| || |||||||| || Sbjct 4599 CAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 4658 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 || || ||||| | |||||| | | || ||||| || || ||| ||||| Sbjct 4659 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711 >seq27195 Length=13093 Score = 168 bits (186), Expect = 9e-37 Identities = 398/593 (67%), Gaps = 6/593 (1%) Strand=Plus/Minus Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 |||| || |||||||||||||| | || || |||| ||||| ||||| || || Sbjct 9237 ATCAGGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAA 9178 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177 || | || ||||| || || || ||||| ||||| || || || || | | | || || Sbjct 9177 GTTAACCCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAA-CAGAAGCTACCGGA 9119 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237 |||||||| ||||| || ||| || || | | || || | || | | Sbjct 9118 GAAGAAGATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCC 9059 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || ||||| | |||||| | || ||||| || ||||| || ||||| || || Sbjct 9058 ATCGATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGC 8999 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||||| | | | || || ||||||| | |||||||| | | |||||||| Sbjct 8998 GCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATA 8939 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || ||||| || || ||||| || ||||| |||||||||||| | || || | Sbjct 8938 CATCTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGA 8879 Query 42418 AACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 || ||||| |||| ||| ||||| ||| | ||| || || ||||||||| | Sbjct 8878 GACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATG 8820 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATTC 42535 | || || || || | || ||||| || || | ||| |||| ||| | || | | Sbjct 8819 CGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCTCC 8761 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || ||| |||| |||| |||||||||||| | ||||| || |||||||| || Sbjct 8760 CAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCT 8701 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 || || ||||| | |||||| | | || ||||| || || ||| ||||| Sbjct 8700 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648 >seq205226 Length=4968 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | || || | |||| | || | || ||| |||| |||||| Sbjct 4506 TCCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 4565 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| ||| | ||||| || || ||||||| |||||| | || ||||||||| ||| || Sbjct 4566 ATTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGA 4625 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || || || |||| || || || ||| ||||||||||| || Sbjct 4626 AACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAAT 4685 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || ||||||||| |||| | ||||| ||||| Sbjct 4686 TCCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668897360173280