Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq146431 196 6e-45
seq27195 168 9e-37
seq205226 113 6e-20
>seq146431
Length=15796
Score = 196 bits (216), Expect = 6e-45
Identities = 404/593 (68%), Gaps = 6/593 (1%)
Strand=Plus/Plus
Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118
|||||||| |||||||| ||||| | ||| || |||| || |||||||| || ||
Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181
Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177
|| | ||| ||||| || ||||| || |||||||| || || || || | | | || ||
Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAA-CAGAAGCTACCTGA 4240
Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237
|||||||| ||||| || || || || | | || || || || | |
Sbjct 4241 GAAGAAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATCC 4300
Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297
|| ||||| | |||||| | || ||||| |||||||| || ||||| | ||
Sbjct 4301 ATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTGC 4360
Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357
|| |||| | | | || || ||||||| | || ||||||| || ||||||||
Sbjct 4361 GCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTATA 4420
Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417
||| || ||||| || || ||||| || || |||||||||||||| | || ||||
Sbjct 4421 CATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGGA 4480
Query 42418 AACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476
|| ||||| |||| ||| ||||| ||| | ||||||| || ||||||||| |
Sbjct 4481 GACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGATG 4539
Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATTC 42535
| || || || || | || ||||| || || | ||| |||| ||| | || | |
Sbjct 4540 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCC 4598
Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595
|| ||| |||| |||| |||||||||||| | ||||| || |||||||| ||
Sbjct 4599 CAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 4658
Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648
|| || ||||| | |||||| | | || ||||| || || ||| |||||
Sbjct 4659 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711
>seq27195
Length=13093
Score = 168 bits (186), Expect = 9e-37
Identities = 398/593 (67%), Gaps = 6/593 (1%)
Strand=Plus/Minus
Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118
|||| || |||||||||||||| | || || |||| ||||| ||||| || ||
Sbjct 9237 ATCAGGCAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAA 9178
Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177
|| | || ||||| || || || ||||| ||||| || || || || | | | || ||
Sbjct 9177 GTTAACCCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAA-CAGAAGCTACCGGA 9119
Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237
|||||||| ||||| || ||| || || | | || || | || | |
Sbjct 9118 GAAGAAGATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCC 9059
Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297
|| ||||| | |||||| | || ||||| || ||||| || ||||| || ||
Sbjct 9058 ATCGATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGC 8999
Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357
||||||| | | | || || ||||||| | |||||||| | | ||||||||
Sbjct 8998 GCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATA 8939
Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417
||| || ||||| || || ||||| || ||||| |||||||||||| | || || |
Sbjct 8938 CATCTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGA 8879
Query 42418 AACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476
|| ||||| |||| ||| ||||| ||| | ||| || || ||||||||| |
Sbjct 8878 GACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATG 8820
Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATTC 42535
| || || || || | || ||||| || || | ||| |||| ||| | || | |
Sbjct 8819 CGGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCTCC 8761
Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595
|| ||| |||| |||| |||||||||||| | ||||| || |||||||| ||
Sbjct 8760 CAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCT 8701
Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648
|| || ||||| | |||||| | | || ||||| || || ||| |||||
Sbjct 8700 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648
>seq205226
Length=4968
Score = 113 bits (124), Expect = 6e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236
|||||| ||||| | || | || || | |||| | || | || ||| |||| ||||||
Sbjct 4506 TCCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACC 4565
Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296
||| ||| | ||||| || || ||||||| |||||| | || ||||||||| ||| ||
Sbjct 4566 ATTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGA 4625
Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356
| ||| || || || || |||| || || || ||| ||||||||||| ||
Sbjct 4626 AACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAAT 4685
Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398
||||| || ||||||||| |||| | ||||| |||||
Sbjct 4686 TCCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 668897360173280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |