Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq78792 122 9e-23 seq26661 105 7e-18 seq236154 98.7 1e-15 seq117562 96.9 4e-15 seq204555 91.5 1e-13 seq210337 89.7 5e-13 seq54724 87.8 2e-12 seq209069 86.0 6e-12 seq167623 86.0 6e-12 seq185166 84.2 2e-11 seq265878 82.4 8e-11 seq153189 82.4 8e-11 >seq78792 Length=14290 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| |||| ||||||||||| || ||||| || || |||||||||||| Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| | |||||| || ||| |||||| ||||||||| || || || Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | ||||||| | ||| || Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 11490 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 11489 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 11443 >seq26661 Length=2801 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || || | |||||||| || || ||||| || ||| | Sbjct 2084 CCACCACGGAGACGCAAGACCAAGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCGGCC 2025 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | || ||||| || |||||||| |||| ||||| ||||| || ||||| Sbjct 2024 AGTGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 1965 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | || | ||||| | | || || Sbjct 1964 ATACCTTCTTTGTCCTGAATCTTAGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCCACC 1905 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||| || ||||| || || ||||| ||||||||| Sbjct 1904 TCAAGGGTAATAGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCATA 1857 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| |||||||||||||| || ||||| || ||||| ||||||||| Sbjct 2282 GTCGACTCTTTCTGTATGTTGTAATCCGCCAGTGTGCGACCATCCTCGAGCTGTTTACCA 2223 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||| ||||| || || || || ||||| ||||| || || || Sbjct 2222 GCAAAGATGAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTG 2163 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||||| | || | ||||||||||| | ||| Sbjct 2162 ACATTGTCAATTGTGTCAGAACTCTCGACTTCCAGGGTGATAGTCTTGCCGGTTAGGGTT 2103 Query 143168 TTTACGAATATTTGCATA 143185 || |||||||| |||||| Sbjct 2102 TTCACGAATATCTGCATA 2085 >seq236154 Length=204 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | |||||| || || |||| |||||||| || || |||||||| ||| Sbjct 35 CCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAA 94 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| |||||| ||||| || || ||| |||||| |||||| || || || || Sbjct 95 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 154 Query 143078 ATGCCTTCTTTGTC 143091 || ||||||||||| Sbjct 155 ATACCTTCTTTGTC 168 >seq117562 Length=2070 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | || | ||| | |||||| || || || ||||||||||| | Sbjct 1457 CCACCTCTGAGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAATCCGCC 1398 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| || || ||||| || |||| || | ||||||||| ||||| Sbjct 1397 AGAGTCCTTCCGTCTTCAAGCTGCTTACCGGCGAAGATAAGTCTTTGCTGATCCGGAGGA 1338 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | || || | | ||| ||| Sbjct 1337 ATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATAGTATCTGAGCTTTCGACT 1278 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| |||||||| || || ||||| ||||||||| Sbjct 1277 TCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATTTGCATA 1230 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 ||| || || | ||| | || ||||||| || || ||||| || || ||||| || || Sbjct 1914 GCCACCACGAAGACGAAGTACCAAATGAAGAGTCGACTCTTTCTGAATATTGTAGTCTGC 1855 Query 143016 TCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | | |||| || | ||||||||||| ||||| ||| |||| || | |||||||| ||| Sbjct 1854 TAAG-GTGCGTCCA-TCTTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGA 1797 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||| ||||| ||| || || | | || | ||||||| | || Sbjct 1796 GGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATAGTGTCCGAGCTCTCA 1737 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || | |||||||| ||||| || || || || |||||||| Sbjct 1736 ACCTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 1687 >seq204555 Length=10983 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 || || || | ||| | ||| | |||| || || ||||| || |||||||| || ||| Sbjct 1264 CCACCACGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGCT 1323 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | |||||||||||||| || ||| |||| || | ||||| || || || Sbjct 1324 AAT-GTCCGACCATCTTCGAGTTGTTTCCCCGCAAAGATTAGCCTCTGCTGGTCCGGTGG 1382 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || ||| ||| |||| | || | |||||| | | || || Sbjct 1383 GATCCCTTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATCGTGTCTGAGCTCTCAAC 1442 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || || ||||| | || || |||||||| |||||| Sbjct 1443 TTCCAAAGTTATGGTTTTACCGGTAAGGGTCTTAACGAATATCTGCATA 1491 >seq210337 Length=1863 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| ||||||| || |||||||| || || |||||||| | Sbjct 358 CCACCACGAAGACGAAGAACCAAATGAAGAGTCGATTCTTTCTGAATATTGTAATCCGCC 417 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || || ||||||||||| |||| || | || || || ||||| Sbjct 418 AAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 477 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| || | | || | ||||||| | || || Sbjct 478 ATCCCTTCTTTGTCCTGAATTTTAGCCTTCACATTATCAATAGTGTCCGAGCTCTCAACC 537 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| ||||| || || || || |||||||| Sbjct 538 TCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 584 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | |||| || || || || || |||||||||||| | Sbjct 586 CCTCCACGAAGACGCAACACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCC 645 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || ||||| || |||||||| |||| || | ||||||||| ||||| Sbjct 646 AAAGTCCGACCATCCTCGAGCTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGG 705 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | |||||| | | || || Sbjct 706 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACATTGTCAATCGTGTCTGAGCTCTCCACC 765 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | || || ||||| | || || ||||| || |||||| Sbjct 766 TCAAGAGTAATGGTTTTACCGGTAAGGGTCTTCACGAAAATCTGCATA 813 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| ||||||||||| || |||||| ||||||||||| ||||| || ||||| ||| Sbjct 1570 TCTTCTAGTTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGGAATCCCTTCCTTG 1629 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || ||| || | | || | ||||| | | || || || | ||| | Sbjct 1630 TCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTTATG 1689 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || || | ||||| |||||||||||||| Sbjct 1690 GTCTTTCCAGTAAGCGTTTTCACGAATATTTGCAT 1724 >seq54724 Length=7877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| ||||| ||||| || || ||||| ||| | Sbjct 2101 CCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCC 2042 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||| |||||||| || || ||| |||||| | ||||| || ||||| Sbjct 2041 AGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGG 1982 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || ||| | | || | ||||| | | || || Sbjct 1981 ATACCTTCTTTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACC 1922 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || || |||||||| || || || || || |||||| Sbjct 1921 TCGAGGGTAATGGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCATA 1874 >seq209069 Length=2205 Score = 86.0 bits (94), Expect = 6e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGT 143030 ||| || | ||||| || || ||||| || ||||||||||| ||| | || | | | Sbjct 1703 CAAGACAAGATGAAGAGTGGACTCTTTGTGGATGTTGTAATCCGCTAAGGTTGTACCA-T 1761 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||| |||| |||| ||||||| | ||| ||||| || ||||| |||||||||| Sbjct 1762 CTTCAAGTTGCTTACAAGCAAAGATCAGCCTTTGTTGATCAGGTGGTATACCTTCTTTGT 1821 Query 143091 C 143091 | Sbjct 1822 C 1822 >seq167623 Length=7090 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| || ||||| || || |||||||||||| Sbjct 2619 CCACCACGGAGACGAAGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 2560 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||||||||||||| || || | |||| || |||||||| || || Sbjct 2559 AGAGTACGGCCGTCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTGGG 2500 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | || || | | ||| || Sbjct 2499 ATTCCTTCCTTGTCTTGGATCTTCGCTTTGACATTGTCGATGGTATCGGATGATTCGACC 2440 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||| ||||| | ||||| ||||| || ||||| Sbjct 2439 TCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 2393 >seq185166 Length=13725 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 6/123 (5%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAG- 143029 ||| || || |||| || || ||||| || ||||||||||| ||| || | |||| Sbjct 3777 CAAGACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAATCCGCTAAT---GTTCGACC 3721 Query 143030 -TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| ||||||||||||||| |||||| | || ||||| || ||||| || ||||| Sbjct 3720 ATCTTCTAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGTATTCCCTCTTT 3661 Query 143089 GTC 143091 ||| Sbjct 3660 GTC 3658 >seq265878 Length=14687 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || ||||||| || || ||||| || || |||||||| || ||| | || Sbjct 5441 CAAGACCAAATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCCAATGTTCGGCCATC 5382 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| ||||||||||||||| |||||| | || ||||| || ||||| || |||||||| Sbjct 5381 TTCTAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGTATTCCCTCTTTGTC 5322 >seq153189 Length=17048 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| || || || || | || || || ||||| ||||||||||| Sbjct 14963 CCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCA 14904 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| || ||||| ||||||||||| |||| ||||| ||||| || || || Sbjct 14903 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 14844 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||| | | || ||| Sbjct 14843 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACT 14784 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | |||||||| || | || || ||||| || |||||| Sbjct 14783 TCAAGGGTGATTGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCATA 14736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505320794448960