Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq29837 91.5 2e-13 seq29830 86.0 9e-12 >seq29837 Length=4748 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| |||||| ||| | |||| |||||| | ||||||||| | ||| | Sbjct 3708 TCAAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTA 3649 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGA-TGGCAA 70302 | | |||||||| || || || ||| ||||| | |||||||| | | ||| ||| | Sbjct 3648 AACTGATGGCACTTCCTCCATGCCACATGTTTT-CACAGTTTTA-TGTTGCGAATGGAGA 3591 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 | | |||||| |||||||||| | ||||||||||| || || ||||| |||||||| Sbjct 3590 ACTTTCATGCCAAATGTATCAGCGCTCAGCCGACATGGGTCTTGGCGTACCATTTAACAT 3531 Query 70363 TGC 70365 ||| Sbjct 3530 TGC 3528 >seq29830 Length=9971 Score = 86.0 bits (94), Expect = 9e-12 Identities = 132/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| |||||| ||| | |||| |||||| | ||||||||| | ||| | Sbjct 1052 TCAAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTA 1111 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGA-TGGCAA 70302 | | |||||||| || || || ||| ||||| | |||||||| | | ||| ||| | Sbjct 1112 AACTGATGGCACTTCCTCCATGCCACATGTTTT-CACAGTTTTA-TGTTGCGAATGGAGA 1169 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 | | ||||| |||||||||| | ||||| ||||| ||||| ||||| |||||||| Sbjct 1170 ACTTTCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGCGTACCATTTAACAT 1229 Query 70363 TGC 70365 ||| Sbjct 1230 TGC 1232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738583802901280