Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_004167.1
Length=39325
Score E
Sequences producing significant alignments: (Bits) Value
seq115326 111 4e-20
seq242999 102 2e-17
>seq115326
Length=14004
Score = 111 bits (122), Expect = 4e-20
Identities = 97/120 (81%), Gaps = 3/120 (3%)
Strand=Plus/Minus
Query 20621 TGGCACTTTACAGTAGACGACAAAGAGATTTATCAGCATCTGCCATTAAATGAGAACGGC 20680
||||| |||||||||||||| |||||||||||||| ||||| |||||||| ||||||||
Sbjct 3070 TGGCATTTTACAGTAGACGATAAAGAGATTTATCAACATCTACCATTAAACGAGAACGGA 3011
Query 20681 TGGCACGCGGGAGACGGAAACCGCGGAACCGGGAACCGGAAATCTATCGGCATTGAAATC 20740
|||||||| |||||||| | || | ||||| | ||||||| | |||||||||
Sbjct 3010 TGGCACGCAGGAGACGGTGA---TGGTCCAGGGAATAGAGAATCTATTGCAATTGAAATC 2954
>seq242999
Length=349438
Score = 102 bits (112), Expect = 2e-17
Identities = 114/152 (75%), Gaps = 3/152 (2%)
Strand=Plus/Plus
Query 20621 TGGCACTTTACAGTAGACGACAAAGAGATTTATCAGCATCTGCCATTAAATGAGAACGGC 20680
|||||||||||||||||||| ||| | || ||||| || || ||| |||||||||||
Sbjct 241555 TGGCACTTTACAGTAGACGATAAACAAATCTATCAACACCTTCCAACTAATGAGAACGGA 241614
Query 20681 TGGCACGCGGGAGACGGAAACCGCGGAACCGGGAACCGGAAATCTATCGGCATTGAAATC 20740
|||||||| ||||| || || ||| |||| ||||| | ||||| || || ||||||
Sbjct 241615 TGGCACGCAGGAGATGGGAA---TGGACCCGGAAACCGTGAGTCTATTGGTATCGAAATC 241671
Query 20741 TGTGAGAATAGCGATGGAGATTTTGAGAAAGC 20772
|| || |||||||| | | | |||||
Sbjct 241672 GCTGTAAACCAAGATGGAGACTATAATAAAGC 241703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 125319453715432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |