Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_004167.1 Length=39325 Score E Sequences producing significant alignments: (Bits) Value seq115326 111 4e-20 seq242999 102 2e-17 >seq115326 Length=14004 Score = 111 bits (122), Expect = 4e-20 Identities = 97/120 (81%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 20621 TGGCACTTTACAGTAGACGACAAAGAGATTTATCAGCATCTGCCATTAAATGAGAACGGC 20680 ||||| |||||||||||||| |||||||||||||| ||||| |||||||| |||||||| Sbjct 3070 TGGCATTTTACAGTAGACGATAAAGAGATTTATCAACATCTACCATTAAACGAGAACGGA 3011 Query 20681 TGGCACGCGGGAGACGGAAACCGCGGAACCGGGAACCGGAAATCTATCGGCATTGAAATC 20740 |||||||| |||||||| | || | ||||| | ||||||| | ||||||||| Sbjct 3010 TGGCACGCAGGAGACGGTGA---TGGTCCAGGGAATAGAGAATCTATTGCAATTGAAATC 2954 >seq242999 Length=349438 Score = 102 bits (112), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 20621 TGGCACTTTACAGTAGACGACAAAGAGATTTATCAGCATCTGCCATTAAATGAGAACGGC 20680 |||||||||||||||||||| ||| | || ||||| || || ||| ||||||||||| Sbjct 241555 TGGCACTTTACAGTAGACGATAAACAAATCTATCAACACCTTCCAACTAATGAGAACGGA 241614 Query 20681 TGGCACGCGGGAGACGGAAACCGCGGAACCGGGAACCGGAAATCTATCGGCATTGAAATC 20740 |||||||| ||||| || || ||| |||| ||||| | ||||| || || |||||| Sbjct 241615 TGGCACGCAGGAGATGGGAA---TGGACCCGGAAACCGTGAGTCTATTGGTATCGAAATC 241671 Query 20741 TGTGAGAATAGCGATGGAGATTTTGAGAAAGC 20772 || || |||||||| | | | ||||| Sbjct 241672 GCTGTAAACCAAGATGGAGACTATAATAAAGC 241703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125319453715432