Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq6041 113 8e-20 seq213831 89.7 9e-13 seq249537 87.8 3e-12 seq264506 86.0 1e-11 seq234186 84.2 4e-11 >seq6041 Length=422222 Score = 113 bits (124), Expect = 8e-20 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 272868 TATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCT 272927 |||||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||| Sbjct 84195 TATATGGTGGGCCCAGTAGGACTTGAACCTACGACCAAAGGATTATGAGTCCTCTGCTCT 84254 Query 272928 AACCAACTGAGCTATAGGCCCT 272949 ||||||||||||||| ||||| Sbjct 84255 AACCAACTGAGCTATGAGCCCT 84276 >seq213831 Length=112690 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791 ||||| ||||||||| |||||| |||||||||||||| || ||||||||||| || Sbjct 52702 TTTAGTATATGGCTCTCCAACCTGGGCTCGAACCAGGGACACACGGATTAACAGTCCGTT 52761 Query 271792 GCTCTACCGACTGAGCTAT 271810 |||||||| |||||||||| Sbjct 52762 GCTCTACCAACTGAGCTAT 52780 >seq249537 Length=1253 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/70 (89%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 272875 TGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCAAC 272934 ||| ||| || ||| ||||||| |||||||||||||||||||||||||||||| ||| || Sbjct 69 TGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACC-AC 11 Query 272935 TGAGCTATAG 272944 ||||||| || Sbjct 10 TGAGCTAAAG 1 >seq264506 Length=78478 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 271734 TAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGC 271793 |||||| |||||| |||||| |||||||||||||| || ||||||||||| |||| Sbjct 76197 TAGAATGTGGCTCTCCAACCTGGGCTCGAACCAGGGACACACGGATTAACAGTCCGTTGC 76138 Query 271794 TCTACCGACTGAGCTAT 271810 |||||| |||||||||| Sbjct 76137 TCTACCAACTGAGCTAT 76121 >seq234186 Length=215 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 271822 ATGGCGCGCCCAAGGGGACTCGAACCCCTGACCACCCGCGTGACAGGCGGGTATTCTAAC 271881 ||||||| | | ||||||||||||| |||| || ||||||||||| ||||||||||| Sbjct 21 ATGGCGCAGCGGACGGGACTCGAACCCGCGACCCCCGGCGTGACAGGCCGGTATTCTAAC 80 Query 271882 CAACTGAACTA 271892 ||||||||||| Sbjct 81 CAACTGAACTA 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 893944703798720