Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq78792 129 4e-25 seq26661 95.1 9e-15 seq210337 91.5 1e-13 seq167623 87.8 1e-12 seq54724 87.8 1e-12 seq117562 84.2 2e-11 >seq78792 Length=14290 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| | |||||||||||| || || || || || |||||||||||| Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| |||||||| || || | ||||||||||| ||||| |||| Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| || || ||| || ||| | || || || || | ||| || Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCT-TTCACATTGTCGATTGTGTCCGAAGATTCAAC 11491 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| ||| || || || || || || ||||| || || || ||||| Sbjct 11490 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 11443 >seq26661 Length=2801 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || ||||| |||||||| ||| ||| | | |||| || | ||| Sbjct 1377 ATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCCTCGAGTTG 1318 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | ||||| | || ||||| |||||||||||| ||||| || || Sbjct 1317 CTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTGGATCTT 1258 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || ||||| || | | || || || | |||||| || || || || Sbjct 1257 AGCCTTGACATTGTCAATGGTGTCAGAACTCTCAACCTCGAGGGTAATCGTCTTGCCCGT 1198 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || ||| || || || || |||||| Sbjct 1197 CAAAGTCTTGACGAAGATCTGCATA 1173 >seq210337 Length=1863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || ||||| || || |||||||| | | | | | || || Sbjct 375 AACCAAATGAAGAGTCGATTCTTTCTGAATATTGTAATCCGCCAAAGTCCGACCATCCTC 434 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| |||||| | || | | |||||||| || || ||||||||||| Sbjct 435 AAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCTTTGTCCTG 494 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| ||| | || || || || | || || || |||||||| || || Sbjct 495 AATTTTAGCCTTCACATTATCAATAGTGTCCGAGCTCTCAACCTCCAAGGTAATAGTCTT 554 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| ||| || ||||| |||||||| Sbjct 555 GCCTGTCAAAGTCTTCACAAAGATTTGCAT 584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||||||||||| | ||| || || | ||| || || || || ||||| || || || Sbjct 1498 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCC 1557 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||||| |||||| || ||| | ||||| ||||| || || || Sbjct 1558 AAG-GTACGGCCATCTTCTAGTTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGG 1616 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||| ||||| ||||| || ||||| ||| || | || ||||| || | || | Sbjct 1617 AATCCCTTCCTTGTCCTGGATCTTTGC-CTTGACGTTGTCGATGGTGTCAGAGCTCTCGA 1675 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| || || || || ||||| || || |||||||| Sbjct 1676 CCTCGAGAGTTATGGTCTTTCCAGTAAGCGTTTTCACGAATATTTGCAT 1724 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | || || || || ||||| |||||||| ||||||||||| Sbjct 1042 CCACCTCTGAGACGAAGTACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATCCGCA 1101 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | ||| || || || | || | | || || || || Sbjct 1102 AGAGTACGTCCATCTTCAAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 1161 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| || || ||| ||| | || || |||||| | || || Sbjct 1162 ATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTATCGGAGCTCTCAACC 1221 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||||||||||| || || ||||| || ||||| ||||||||| Sbjct 1222 TCAAGAGTAATGGTTTTCCCAGTGAGAGTCTTGACAAAGATTTGCATA 1269 >seq167623 Length=7090 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || || || |||||||||||| ||| | | ||||||| | ||| Sbjct 2596 ATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTCTTCGAGTTG 2537 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 ||| || ||| | ||||| || || || || ||| |||||||| ||||| || || Sbjct 2536 TTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 2477 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || ||||||||| ||| || || | || || || || || | Sbjct 2476 CGCT-TTGACATTGTCGATGGTATCGGATGATTCGACCTCGAGAGTTATCGTCTTCCCGG 2418 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | || ||||| || || || ||||| Sbjct 2417 TTAGGGTTTTCACGAAGATCTGCAT 2393 >seq54724 Length=7877 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || ||||| || || ||||| ||| ||| |||| |||| Sbjct 2086 AACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGCCAGAGTTCTGCCGTCC 2027 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| || || || | ||||| | || ||||| || || ||||||||||| Sbjct 2026 TCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCTTCTTTGTCC 1967 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| || || | || ||||| || | || || || | |||||||||| Sbjct 1966 TGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTAATGGTT 1907 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| |||| || || ||||| || |||||| Sbjct 1906 TTACCGGTCAAGGTCTTGACAAAGATCTGCATA 1874 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGC 15207 |||| ||| || ||||| ||||| || || || ||||||||||| || || | | | Sbjct 1633 CTTAGAACCAAGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCCAAGG-TACGGCC 1575 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| || || || || ||| | ||||| | || || || ||||||||||| || Sbjct 1574 ATCTTCCAACTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTT 1515 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| || ||| || | || || ||||| | |||| || || | ||| || Sbjct 1514 ATCCTGAATCTTAGCCTTAACGTTGTCGATCGTATCAGAACTTTCCACCTCGAGGGTGAT 1455 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || |||||||| ||||| || ||||| Sbjct 1454 AGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 1419 >seq117562 Length=2070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||||||||||| | ||| || || | ||| || || || || ||||| || || || Sbjct 1229 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCAGCC 1170 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||||| ||||| || ||| | ||||| ||||| || || || Sbjct 1169 AAG-GTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGAGG 1111 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||| ||||| ||||| || ||||| ||| || | || ||||| || | || | Sbjct 1110 AATCCCTTCCTTGTCCTGGATCTTTGC-CTTGACGTTGTCGATGGTGTCAGAGCTCTCGA 1052 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| || || || |||||||| || || |||||||| Sbjct 1051 CCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTCACGAATATTTGCAT 1003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360999639841548